Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2732c

Experiment: 7H9 with Clofazimine 0.072 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv2731 and Rv2732c overlap by 4 nucleotidesRv2732c and Rv2733c overlap by 4 nucleotides Rv2731: Rv2731 - Conserved alanine and arginine rich protein, at 3,043,026 to 3,044,378 Rv2731 Rv2732c: Rv2732c - Probable conserved transmembrane protein, at 3,044,375 to 3,044,989 Rv2732c Rv2733c: Rv2733c - Conserved hypothetical alanine, arginine-rich protein, at 3,044,986 to 3,046,524 Rv2733c Position (kb) 3044 3045Strain fitness (log2 ratio) -1 0 1 2at 3043.541 kb on + strand, within Rv2731at 3043.541 kb on + strand, within Rv2731at 3043.647 kb on - strand, within Rv2731at 3043.689 kb on + strand, within Rv2731at 3043.689 kb on + strand, within Rv2731at 3043.689 kb on + strand, within Rv2731at 3043.706 kb on + strand, within Rv2731at 3044.621 kb on + strand, within Rv2732cat 3045.544 kb on - strand, within Rv2733cat 3045.949 kb on - strand, within Rv2733c

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Per-strain Table

Position Strand Gene LocusTag Fraction 7H9 with Clofazimine 0.072 ug/mL
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3,043,541 + Rv2731 0.38 +0.4
3,043,541 + Rv2731 0.38 +0.9
3,043,647 - Rv2731 0.46 +0.1
3,043,689 + Rv2731 0.49 +0.2
3,043,689 + Rv2731 0.49 -0.4
3,043,689 + Rv2731 0.49 -0.1
3,043,706 + Rv2731 0.50 +1.8
3,044,621 + Rv2732c 0.40 -1.0
3,045,544 - Rv2733c 0.36 +1.5
3,045,949 - Rv2733c 0.63 -0.6

Or see this region's nucleotide sequence