Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1867

Experiment: 7H9 with Clofazimine 0.072 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Clofazimine 0.072 ug/mL
2,114,967	+		Rv1866	0.78	-0.3
2,115,434	-				+0.2
2,115,694	+				-0.2
2,115,801	-				-0.4
2,116,265	+		Rv1867	0.34	+0.1
2,116,266	-		Rv1867	0.34	-1.2
2,116,266	-		Rv1867	0.34	-0.4
2,116,266	-		Rv1867	0.34	+1.6
2,116,272	-		Rv1867	0.34	+2.1
2,116,368	+		Rv1867	0.41	+0.4
2,116,368	+		Rv1867	0.41	-0.1
2,116,463	+		Rv1867	0.47	+0.5
2,116,464	-		Rv1867	0.47	-1.2
2,116,474	+		Rv1867	0.48	+0.7
2,116,474	+		Rv1867	0.48	+1.3
2,116,718	+		Rv1867	0.64	-0.1
2,116,719	-		Rv1867	0.64	+1.4
2,116,719	-		Rv1867	0.64	-0.2
2,116,841	+		Rv1867	0.73	-0.7
2,116,953	-		Rv1867	0.80	-0.1
2,117,310	+				-0.9
2,117,311	-				+0.1
2,117,362	-				-0.2
2,117,433	+				-0.9
2,117,476	+				-0.7
2,117,476	+				-0.2
2,117,672	+		Rv1868	0.15	-0.6
2,117,672	+		Rv1868	0.15	-0.1
2,117,673	-		Rv1868	0.16	-0.6
2,117,673	-		Rv1868	0.16	+1.7
2,117,673	-		Rv1868	0.16	+0.2
2,117,674	+		Rv1868	0.16	-0.4
2,117,674	+		Rv1868	0.16	+0.3
2,117,828	+		Rv1868	0.23	-0.4
2,117,828	+		Rv1868	0.23	+1.2
2,117,828	+		Rv1868	0.23	-1.3
2,117,828	+		Rv1868	0.23	-0.1
2,117,829	-		Rv1868	0.23	+0.1
2,117,829	-		Rv1868	0.23	-0.9
2,117,829	-		Rv1868	0.23	+0.0
2,118,143	+		Rv1868	0.38	+1.9
2,118,143	+		Rv1868	0.38	-0.7
2,118,143	+		Rv1868	0.38	+1.7
2,118,143	+		Rv1868	0.38	-0.3
2,118,143	+		Rv1868	0.38	-0.0
2,118,144	-		Rv1868	0.38	-0.6
2,118,144	-		Rv1868	0.38	+1.6
2,118,144	-		Rv1868	0.38	-0.5
2,118,144	-		Rv1868	0.38	+1.1