Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1818c

Experiment: 7H9 with Clofazimine 0.072 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Clofazimine 0.072 ug/mL
2,060,224	-		Rv1817	0.43	+0.1
2,060,330	+		Rv1817	0.50	-0.6
2,060,331	-		Rv1817	0.50	-0.3
2,060,331	-		Rv1817	0.50	-0.2
2,060,331	-		Rv1817	0.50	+0.7
2,060,376	-		Rv1817	0.53	-0.3
2,060,406	+		Rv1817	0.55	+0.7
2,060,407	-		Rv1817	0.55	-0.5
2,060,534	+		Rv1817	0.64	-0.1
2,060,534	+		Rv1817	0.64	-0.9
2,060,586	-		Rv1817	0.68	-0.3
2,060,724	-		Rv1817	0.77	-0.2
2,060,841	-		Rv1817	0.85	+0.3
2,060,924	+				-0.8
2,060,973	-				-0.7
2,061,056	+				+0.4
2,061,056	+				-0.2
2,061,056	+				-0.4
2,061,057	-				-0.3
2,061,145	-				-0.6
2,061,145	-				-0.7
2,061,180	-				+0.6
2,061,873	+		Rv1818c	0.46	-0.1
2,061,874	-		Rv1818c	0.46	-0.9
2,062,150	+		Rv1818c	0.65	+0.1
2,062,150	+		Rv1818c	0.65	-0.6
2,062,150	+		Rv1818c	0.65	-1.0
2,062,150	+		Rv1818c	0.65	+0.8
2,062,151	-		Rv1818c	0.65	+0.3
2,062,415	+		Rv1818c	0.83	-0.1
2,062,416	-		Rv1818c	0.83	-0.3
2,062,491	-		Rv1818c	0.88	-0.7
2,062,810	+				+0.4
2,062,810	+				+0.6
2,062,810	+				+0.0
2,062,811	-				-0.3
2,062,866	+				-0.3
2,062,867	-				+0.2
2,062,997	+				-0.1
2,062,997	+				-0.6
2,063,227	+		Rv1819c	0.22	+0.3
2,063,227	+		Rv1819c	0.22	-0.0
2,063,227	+		Rv1819c	0.22	+1.7
2,063,228	-		Rv1819c	0.22	+0.2
2,063,228	-		Rv1819c	0.22	-0.4
2,063,228	-		Rv1819c	0.22	-0.5
2,063,293	+		Rv1819c	0.25	+1.7
2,063,293	+		Rv1819c	0.25	-1.2
2,063,423	+		Rv1819c	0.32	-0.6
2,063,423	+		Rv1819c	0.32	-0.5
2,063,423	+		Rv1819c	0.32	-0.4
2,063,423	+		Rv1819c	0.32	-0.0
2,063,423	+		Rv1819c	0.32	-0.4
2,063,423	+		Rv1819c	0.32	-0.3
2,063,424	-		Rv1819c	0.32	-1.1
2,063,424	-		Rv1819c	0.32	-0.5
2,063,567	-		Rv1819c	0.39	-0.3
2,063,567	-		Rv1819c	0.39	-0.3
2,063,567	-		Rv1819c	0.39	-0.1