Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1494

Experiment: 7H9 with Clofazimine 0.072 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Clofazimine 0.072 ug/mL
1,685,271	+		Rv1493	0.56	+0.9
1,685,271	+		Rv1493	0.56	+0.3
1,685,271	+		Rv1493	0.56	-0.4
1,685,275	-		Rv1493	0.56	-0.0
1,685,460	+		Rv1493	0.65	-0.2
1,685,649	-		Rv1493	0.73	-0.6
1,685,727	+		Rv1493	0.76	-0.2
1,685,727	+		Rv1493	0.76	+0.7
1,685,727	+		Rv1493	0.76	-0.7
1,685,728	-		Rv1493	0.76	+0.0
1,685,728	-		Rv1493	0.76	-0.1
1,685,728	-		Rv1493	0.76	-0.1
1,686,243	+				+0.1
1,686,243	+				-2.8
1,686,371	-		Rv1494	0.33	-1.3
1,686,440	+		Rv1494	0.56	-0.4
1,686,466	+		Rv1494	0.64	-0.2
1,686,497	-		Rv1494	0.75	-0.1
1,686,502	+		Rv1494	0.76	-0.4
1,686,503	-		Rv1494	0.77	-0.6
1,686,713	-		Rv1495	0.45	-0.4
1,686,875	-				-0.2
1,687,207	+		Rv1496	0.32	+0.1
1,687,207	+		Rv1496	0.32	-0.1
1,687,568	+		Rv1496	0.68	-0.9
1,687,568	+		Rv1496	0.68	+0.5
1,687,569	-		Rv1496	0.68	+1.0