Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1678

Experiment: 7H9 with Clofazimine 0.072 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Clofazimine 0.072 ug/mL
1,901,467	+		Rv1676	0.60	-0.3
1,901,668	+		Rv1676	0.88	-0.1
1,901,778	-				-0.1
1,901,783	-				-0.5
1,902,088	+		Rv1677	0.62	+0.4
1,902,117	+		Rv1677	0.67	-0.3
1,902,512	-		Rv1678	0.13	-2.0
1,902,568	+		Rv1678	0.19	-0.6
1,902,569	-		Rv1678	0.19	-0.8
1,902,569	-		Rv1678	0.19	-0.8
1,903,020	-		Rv1678	0.69	-1.2
1,903,759	-		Rv1679	0.41	-0.4
1,903,923	+		Rv1679	0.56	+0.4