Experiment: 7H9 with Clofazimine 0.072 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0470A and Rv0471c overlap by 70 nucleotides Rv0471c and Rv0472c are separated by 9 nucleotides Rv0472c and Rv0473 are separated by 136 nucleotides
Rv0470A: Rv0470A - Hypothetical protein, at 561,854 to 562,294
Rv0470A
Rv0471c: Rv0471c - Hypothetical protein, at 562,225 to 562,713
Rv0471c
Rv0472c: Rv0472c - Probable transcriptional regulatory protein (possibly TetR-family), at 562,723 to 563,427
Rv0472c
Rv0473: Rv0473 - Possible conserved transmembrane protein, at 563,564 to 564,934
Rv0473
Position (kb) 562
563
564 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 561.798 kb on + strand at 561.798 kb on + strand at 561.799 kb on - strand at 561.952 kb on + strand, within Rv0470A at 561.953 kb on - strand, within Rv0470A at 561.953 kb on - strand, within Rv0470A at 562.091 kb on + strand, within Rv0470A at 562.099 kb on + strand, within Rv0470A at 562.100 kb on - strand, within Rv0470A at 562.100 kb on - strand, within Rv0470A at 562.100 kb on - strand, within Rv0470A at 562.103 kb on + strand, within Rv0470A at 562.103 kb on + strand, within Rv0470A at 562.103 kb on + strand, within Rv0470A at 562.103 kb on + strand, within Rv0470A at 562.104 kb on - strand, within Rv0470A at 562.104 kb on - strand, within Rv0470A at 562.104 kb on - strand, within Rv0470A at 562.104 kb on - strand, within Rv0470A at 562.107 kb on + strand, within Rv0470A at 562.160 kb on + strand, within Rv0470A at 562.197 kb on + strand, within Rv0470A at 562.219 kb on + strand, within Rv0470A at 562.219 kb on + strand, within Rv0470A at 562.302 kb on + strand, within Rv0471c at 562.303 kb on - strand, within Rv0471c at 562.303 kb on - strand, within Rv0471c at 562.303 kb on - strand, within Rv0471c at 562.303 kb on - strand, within Rv0471c at 562.305 kb on + strand, within Rv0471c at 562.305 kb on + strand, within Rv0471c at 562.305 kb on + strand, within Rv0471c at 562.306 kb on - strand, within Rv0471c at 562.306 kb on - strand, within Rv0471c at 562.306 kb on - strand, within Rv0471c at 562.306 kb on - strand, within Rv0471c at 562.359 kb on + strand, within Rv0471c at 562.359 kb on + strand, within Rv0471c at 562.359 kb on + strand, within Rv0471c at 562.360 kb on - strand, within Rv0471c at 562.360 kb on - strand, within Rv0471c at 562.360 kb on - strand, within Rv0471c at 562.360 kb on - strand, within Rv0471c at 562.360 kb on - strand, within Rv0471c at 562.360 kb on - strand, within Rv0471c at 562.361 kb on + strand, within Rv0471c at 562.361 kb on + strand, within Rv0471c at 562.361 kb on + strand, within Rv0471c at 562.361 kb on + strand, within Rv0471c at 562.362 kb on - strand, within Rv0471c at 562.362 kb on - strand, within Rv0471c at 562.362 kb on - strand, within Rv0471c at 562.362 kb on - strand, within Rv0471c at 562.362 kb on - strand, within Rv0471c at 562.403 kb on + strand, within Rv0471c at 562.404 kb on - strand, within Rv0471c at 562.418 kb on + strand, within Rv0471c at 562.418 kb on + strand, within Rv0471c at 562.451 kb on + strand, within Rv0471c at 562.452 kb on - strand, within Rv0471c at 562.464 kb on + strand, within Rv0471c at 562.464 kb on + strand, within Rv0471c at 562.464 kb on + strand, within Rv0471c at 562.464 kb on + strand, within Rv0471c at 562.464 kb on + strand, within Rv0471c at 562.465 kb on - strand, within Rv0471c at 562.465 kb on - strand, within Rv0471c at 562.465 kb on - strand, within Rv0471c at 562.670 kb on + strand at 562.671 kb on - strand at 562.724 kb on + strand at 562.724 kb on + strand at 562.724 kb on + strand at 562.841 kb on + strand, within Rv0472c at 562.923 kb on - strand, within Rv0472c at 563.050 kb on - strand, within Rv0472c at 563.102 kb on + strand, within Rv0472c at 563.102 kb on + strand, within Rv0472c at 563.103 kb on - strand, within Rv0472c at 563.244 kb on - strand, within Rv0472c at 563.278 kb on + strand, within Rv0472c at 563.415 kb on + strand at 563.464 kb on + strand at 563.464 kb on + strand at 563.534 kb on + strand at 563.535 kb on - strand at 563.535 kb on - strand at 563.535 kb on - strand at 563.575 kb on + strand at 563.575 kb on + strand at 563.575 kb on + strand at 563.575 kb on + strand at 563.575 kb on + strand at 563.848 kb on + strand, within Rv0473 at 564.036 kb on + strand, within Rv0473 at 564.036 kb on + strand, within Rv0473 at 564.260 kb on - strand, within Rv0473 at 564.410 kb on - strand, within Rv0473
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Clofazimine 0.072 ug/mL remove 561,798 + +0.3 561,798 + -0.6 561,799 - -0.5 561,952 + Rv0470A 0.22 +0.3 561,953 - Rv0470A 0.22 -0.1 561,953 - Rv0470A 0.22 -0.2 562,091 + Rv0470A 0.54 -0.4 562,099 + Rv0470A 0.56 -0.3 562,100 - Rv0470A 0.56 -1.0 562,100 - Rv0470A 0.56 +0.3 562,100 - Rv0470A 0.56 -0.3 562,103 + Rv0470A 0.56 +2.0 562,103 + Rv0470A 0.56 +2.0 562,103 + Rv0470A 0.56 +0.1 562,103 + Rv0470A 0.56 +0.6 562,104 - Rv0470A 0.57 -0.1 562,104 - Rv0470A 0.57 -0.2 562,104 - Rv0470A 0.57 -0.1 562,104 - Rv0470A 0.57 -0.2 562,107 + Rv0470A 0.57 -0.1 562,160 + Rv0470A 0.69 -0.6 562,197 + Rv0470A 0.78 +0.1 562,219 + Rv0470A 0.83 -1.0 562,219 + Rv0470A 0.83 -0.1 562,302 + Rv0471c 0.16 +1.4 562,303 - Rv0471c 0.16 -0.4 562,303 - Rv0471c 0.16 -0.1 562,303 - Rv0471c 0.16 +0.4 562,303 - Rv0471c 0.16 -0.3 562,305 + Rv0471c 0.16 +2.0 562,305 + Rv0471c 0.16 -0.1 562,305 + Rv0471c 0.16 -0.4 562,306 - Rv0471c 0.17 -0.0 562,306 - Rv0471c 0.17 -0.4 562,306 - Rv0471c 0.17 -1.1 562,306 - Rv0471c 0.17 -0.7 562,359 + Rv0471c 0.27 -0.4 562,359 + Rv0471c 0.27 -0.2 562,359 + Rv0471c 0.27 -1.2 562,360 - Rv0471c 0.28 +0.3 562,360 - Rv0471c 0.28 +0.5 562,360 - Rv0471c 0.28 -0.5 562,360 - Rv0471c 0.28 +0.7 562,360 - Rv0471c 0.28 -0.6 562,360 - Rv0471c 0.28 -0.1 562,361 + Rv0471c 0.28 +0.3 562,361 + Rv0471c 0.28 -0.4 562,361 + Rv0471c 0.28 -1.4 562,361 + Rv0471c 0.28 -0.3 562,362 - Rv0471c 0.28 -0.6 562,362 - Rv0471c 0.28 -0.1 562,362 - Rv0471c 0.28 -0.5 562,362 - Rv0471c 0.28 -1.2 562,362 - Rv0471c 0.28 +0.4 562,403 + Rv0471c 0.36 +2.3 562,404 - Rv0471c 0.37 +2.0 562,418 + Rv0471c 0.39 -0.1 562,418 + Rv0471c 0.39 +0.4 562,451 + Rv0471c 0.46 -0.4 562,452 - Rv0471c 0.46 -0.1 562,464 + Rv0471c 0.49 +0.4 562,464 + Rv0471c 0.49 -0.2 562,464 + Rv0471c 0.49 -0.8 562,464 + Rv0471c 0.49 -0.3 562,464 + Rv0471c 0.49 +0.3 562,465 - Rv0471c 0.49 +0.1 562,465 - Rv0471c 0.49 +0.4 562,465 - Rv0471c 0.49 +0.5 562,670 + -0.1 562,671 - -0.2 562,724 + +1.5 562,724 + -0.3 562,724 + -0.6 562,841 + Rv0472c 0.17 -2.1 562,923 - Rv0472c 0.28 -3.7 563,050 - Rv0472c 0.46 -0.4 563,102 + Rv0472c 0.54 -3.0 563,102 + Rv0472c 0.54 -1.1 563,103 - Rv0472c 0.54 -2.2 563,244 - Rv0472c 0.74 -0.4 563,278 + Rv0472c 0.79 -1.5 563,415 + -1.8 563,464 + -1.0 563,464 + -0.4 563,534 + -1.1 563,535 - +2.0 563,535 - +1.2 563,535 - -0.1 563,575 + -0.7 563,575 + -0.1 563,575 + -0.9 563,575 + -1.5 563,575 + -0.5 563,848 + Rv0473 0.21 -0.0 564,036 + Rv0473 0.34 +0.0 564,036 + Rv0473 0.34 +0.1 564,260 - Rv0473 0.51 -0.3 564,410 - Rv0473 0.62 +0.1
Or see this region's nucleotide sequence