Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0305c

Experiment: 7H9 with Clofazimine 0.072 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv0304c and Rv0305c are separated by 55 nucleotidesRv0305c and Rv0306 are separated by 202 nucleotidesRv0306 and Rv0307c overlap by 13 nucleotides Rv0304c: Rv0304c - PPE family protein PPE5, at 366,150 to 372,764 Rv0304c Rv0305c: Rv0305c - PPE family protein PPE6, at 372,820 to 375,711 Rv0305c Rv0306: Rv0306 - Putative oxidoreductase, at 375,914 to 376,585 Rv0306 Rv0307c: Rv0307c - Unknown protein, at 376,573 to 377,055 Rv0307c Position (kb) 372 373 374 375 376Strain fitness (log2 ratio) -2 -1 0 1 2at 371.890 kb on + strand, within Rv0304cat 371.890 kb on + strand, within Rv0304cat 371.891 kb on - strand, within Rv0304cat 371.969 kb on + strand, within Rv0304cat 372.346 kb on + strandat 372.347 kb on - strandat 372.406 kb on + strandat 372.495 kb on - strandat 372.554 kb on + strandat 372.555 kb on - strandat 372.557 kb on + strandat 372.596 kb on + strandat 372.609 kb on - strandat 372.665 kb on - strandat 372.765 kb on - strandat 372.765 kb on - strandat 372.881 kb on + strandat 372.882 kb on - strandat 372.988 kb on - strandat 373.076 kb on - strandat 373.077 kb on + strandat 373.078 kb on - strandat 373.078 kb on - strandat 373.108 kb on - strandat 373.108 kb on - strandat 373.314 kb on - strand, within Rv0305cat 373.314 kb on - strand, within Rv0305cat 373.314 kb on - strand, within Rv0305cat 373.317 kb on + strand, within Rv0305cat 373.373 kb on + strand, within Rv0305cat 373.373 kb on + strand, within Rv0305cat 373.373 kb on + strand, within Rv0305cat 373.373 kb on + strand, within Rv0305cat 373.373 kb on + strand, within Rv0305cat 373.373 kb on + strand, within Rv0305cat 373.393 kb on - strand, within Rv0305cat 373.675 kb on - strand, within Rv0305cat 373.794 kb on + strand, within Rv0305cat 373.794 kb on + strand, within Rv0305cat 373.887 kb on + strand, within Rv0305cat 373.929 kb on + strand, within Rv0305cat 373.929 kb on + strand, within Rv0305cat 373.967 kb on + strand, within Rv0305cat 373.968 kb on - strand, within Rv0305cat 373.968 kb on - strand, within Rv0305cat 373.996 kb on - strand, within Rv0305cat 374.315 kb on + strand, within Rv0305cat 374.315 kb on + strand, within Rv0305cat 374.315 kb on + strand, within Rv0305cat 374.316 kb on - strand, within Rv0305cat 374.319 kb on - strand, within Rv0305cat 374.404 kb on + strand, within Rv0305cat 374.405 kb on - strand, within Rv0305cat 374.420 kb on - strand, within Rv0305cat 374.420 kb on - strand, within Rv0305cat 374.420 kb on - strand, within Rv0305cat 374.420 kb on - strand, within Rv0305cat 374.420 kb on - strand, within Rv0305cat 374.484 kb on - strand, within Rv0305cat 374.484 kb on - strand, within Rv0305cat 374.484 kb on - strand, within Rv0305cat 374.484 kb on - strand, within Rv0305cat 374.591 kb on + strand, within Rv0305cat 374.592 kb on - strand, within Rv0305cat 374.604 kb on - strand, within Rv0305cat 374.604 kb on - strand, within Rv0305cat 374.607 kb on + strand, within Rv0305cat 374.608 kb on - strand, within Rv0305cat 374.608 kb on - strand, within Rv0305cat 374.608 kb on - strand, within Rv0305cat 374.608 kb on - strand, within Rv0305cat 374.608 kb on - strand, within Rv0305cat 374.633 kb on + strand, within Rv0305cat 374.633 kb on + strand, within Rv0305cat 374.663 kb on + strand, within Rv0305cat 374.664 kb on - strand, within Rv0305cat 375.029 kb on + strand, within Rv0305cat 375.029 kb on + strand, within Rv0305cat 375.029 kb on + strand, within Rv0305cat 375.030 kb on - strand, within Rv0305cat 375.030 kb on - strand, within Rv0305cat 375.178 kb on + strand, within Rv0305cat 375.251 kb on + strand, within Rv0305cat 375.293 kb on + strand, within Rv0305cat 375.497 kb on + strandat 375.498 kb on - strandat 375.666 kb on - strandat 375.666 kb on - strandat 375.746 kb on + strandat 375.758 kb on - strandat 375.772 kb on + strandat 375.805 kb on + strandat 375.818 kb on + strandat 375.860 kb on - strandat 375.919 kb on + strandat 375.919 kb on + strandat 375.919 kb on + strandat 375.944 kb on + strandat 375.944 kb on + strandat 376.141 kb on - strand, within Rv0306at 376.190 kb on + strand, within Rv0306at 376.256 kb on + strand, within Rv0306at 376.256 kb on + strand, within Rv0306at 376.256 kb on + strand, within Rv0306at 376.389 kb on + strand, within Rv0306at 376.584 kb on - strandat 376.610 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 7H9 with Clofazimine 0.072 ug/mL
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371,890 + Rv0304c 0.87 -0.2
371,890 + Rv0304c 0.87 +2.0
371,891 - Rv0304c 0.87 -0.2
371,969 + Rv0304c 0.88 +0.4
372,346 + +2.0
372,347 - -0.5
372,406 + +0.4
372,495 - -0.0
372,554 + -0.1
372,555 - -0.3
372,557 + +0.2
372,596 + +0.5
372,609 - -0.3
372,665 - -0.6
372,765 - -0.0
372,765 - -0.5
372,881 + +0.1
372,882 - -0.2
372,988 - -0.2
373,076 - +0.2
373,077 + -0.5
373,078 - -0.4
373,078 - -0.1
373,108 - +0.5
373,108 - +0.3
373,314 - Rv0305c 0.17 -0.7
373,314 - Rv0305c 0.17 -0.7
373,314 - Rv0305c 0.17 +0.5
373,317 + Rv0305c 0.17 -0.3
373,373 + Rv0305c 0.19 -0.8
373,373 + Rv0305c 0.19 -0.1
373,373 + Rv0305c 0.19 -1.0
373,373 + Rv0305c 0.19 +0.4
373,373 + Rv0305c 0.19 -0.4
373,373 + Rv0305c 0.19 -0.2
373,393 - Rv0305c 0.20 -0.1
373,675 - Rv0305c 0.30 -1.4
373,794 + Rv0305c 0.34 -1.3
373,794 + Rv0305c 0.34 +1.4
373,887 + Rv0305c 0.37 -1.6
373,929 + Rv0305c 0.38 -1.3
373,929 + Rv0305c 0.38 -0.3
373,967 + Rv0305c 0.40 -0.8
373,968 - Rv0305c 0.40 -0.0
373,968 - Rv0305c 0.40 -1.4
373,996 - Rv0305c 0.41 -1.9
374,315 + Rv0305c 0.52 -0.2
374,315 + Rv0305c 0.52 +0.7
374,315 + Rv0305c 0.52 -0.1
374,316 - Rv0305c 0.52 +0.2
374,319 - Rv0305c 0.52 +1.0
374,404 + Rv0305c 0.55 -0.2
374,405 - Rv0305c 0.55 -0.0
374,420 - Rv0305c 0.55 +0.4
374,420 - Rv0305c 0.55 +0.1
374,420 - Rv0305c 0.55 -0.7
374,420 - Rv0305c 0.55 -0.5
374,420 - Rv0305c 0.55 -1.7
374,484 - Rv0305c 0.58 -0.3
374,484 - Rv0305c 0.58 -0.7
374,484 - Rv0305c 0.58 -1.1
374,484 - Rv0305c 0.58 -1.2
374,591 + Rv0305c 0.61 +0.8
374,592 - Rv0305c 0.61 -0.6
374,604 - Rv0305c 0.62 +0.1
374,604 - Rv0305c 0.62 -0.0
374,607 + Rv0305c 0.62 -0.8
374,608 - Rv0305c 0.62 +0.3
374,608 - Rv0305c 0.62 -0.2
374,608 - Rv0305c 0.62 -0.4
374,608 - Rv0305c 0.62 -2.2
374,608 - Rv0305c 0.62 -0.8
374,633 + Rv0305c 0.63 +0.1
374,633 + Rv0305c 0.63 -0.4
374,663 + Rv0305c 0.64 +0.1
374,664 - Rv0305c 0.64 -0.1
375,029 + Rv0305c 0.76 -1.1
375,029 + Rv0305c 0.76 +1.3
375,029 + Rv0305c 0.76 -0.4
375,030 - Rv0305c 0.76 +1.2
375,030 - Rv0305c 0.76 -0.2
375,178 + Rv0305c 0.82 -0.6
375,251 + Rv0305c 0.84 -0.7
375,293 + Rv0305c 0.86 +2.0
375,497 + -0.4
375,498 - -0.7
375,666 - +0.3
375,666 - +0.1
375,746 + -0.0
375,758 - +1.8
375,772 + -0.0
375,805 + +0.7
375,818 + +0.1
375,860 - +0.2
375,919 + -1.1
375,919 + -0.7
375,919 + -0.6
375,944 + -0.7
375,944 + -0.5
376,141 - Rv0306 0.34 -0.1
376,190 + Rv0306 0.41 +0.2
376,256 + Rv0306 0.51 +0.8
376,256 + Rv0306 0.51 +1.5
376,256 + Rv0306 0.51 +0.1
376,389 + Rv0306 0.71 -0.1
376,584 - -0.4
376,610 + -0.6

Or see this region's nucleotide sequence