Experiment: 7H9 with Clofazimine 0.072 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0258c and Rv0259c are separated by 24 nucleotides Rv0259c and Rv0260c overlap by 4 nucleotides Rv0260c and Rv0261c are separated by 99 nucleotides
Rv0258c: Rv0258c - Conserved hypothetical protein, at 310,294 to 310,749
Rv0258c
Rv0259c: Rv0259c - Conserved hypothetical protein, at 310,774 to 311,517
Rv0259c
Rv0260c: Rv0260c - Possible transcriptional regulatory protein, at 311,514 to 312,659
Rv0260c
Rv0261c: Rv0261c - Probable integral membrane nitrite extrusion protein NarK3 (nitrite facilitator), at 312,759 to 314,168
Rv0261c
Position (kb) 311
312
313 Strain fitness (log2 ratio) -1
0
1 at 311.517 kb on + strand at 311.704 kb on - strand, within Rv0260c at 312.009 kb on + strand, within Rv0260c at 312.103 kb on - strand, within Rv0260c at 312.227 kb on + strand, within Rv0260c at 312.227 kb on + strand, within Rv0260c at 312.659 kb on + strand at 312.660 kb on - strand at 312.835 kb on + strand at 312.868 kb on + strand at 312.869 kb on - strand at 313.245 kb on + strand, within Rv0261c at 313.291 kb on + strand, within Rv0261c at 313.291 kb on + strand, within Rv0261c at 313.451 kb on - strand, within Rv0261c at 313.541 kb on - strand, within Rv0261c at 313.582 kb on + strand, within Rv0261c at 313.583 kb on - strand, within Rv0261c at 313.585 kb on - strand, within Rv0261c at 313.585 kb on - strand, within Rv0261c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Clofazimine 0.072 ug/mL remove 311,517 + -0.7 311,704 - Rv0260c 0.17 -0.5 312,009 + Rv0260c 0.43 -0.3 312,103 - Rv0260c 0.51 +0.2 312,227 + Rv0260c 0.62 -0.5 312,227 + Rv0260c 0.62 -0.5 312,659 + +0.0 312,660 - -0.3 312,835 + -0.3 312,868 + +0.4 312,869 - -1.0 313,245 + Rv0261c 0.34 -1.5 313,291 + Rv0261c 0.38 +0.8 313,291 + Rv0261c 0.38 +0.4 313,451 - Rv0261c 0.49 -0.7 313,541 - Rv0261c 0.55 +1.7 313,582 + Rv0261c 0.58 -0.2 313,583 - Rv0261c 0.58 -0.3 313,585 - Rv0261c 0.59 -0.9 313,585 - Rv0261c 0.59 -0.2
Or see this region's nucleotide sequence