Experiment: 7H9 with Clofazimine 0.072 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0177 and Rv0178 overlap by 34 nucleotides Rv0178 and Rv0179c are separated by 30 nucleotides Rv0179c and Rv0180c are separated by 79 nucleotides
Rv0177: Rv0177 - Probable conserved Mce associated protein, at 208,417 to 208,971
Rv0177
Rv0178: Rv0178 - Probable conserved Mce associated membrane protein, at 208,938 to 209,672
Rv0178
Rv0179c: Rv0179c - Possible lipoprotein LprO, at 209,703 to 210,812
Rv0179c
Rv0180c: Rv0180c - Probable conserved transmembrane protein, at 210,892 to 212,250
Rv0180c
Position (kb) 209
210
211 Strain fitness (log2 ratio) -2
-1
0
1
2 at 208.726 kb on + strand, within Rv0177 at 208.827 kb on + strand, within Rv0177 at 208.828 kb on - strand, within Rv0177 at 209.247 kb on + strand, within Rv0178 at 209.460 kb on - strand, within Rv0178 at 209.521 kb on - strand, within Rv0178 at 209.574 kb on + strand, within Rv0178 at 209.574 kb on + strand, within Rv0178 at 209.574 kb on + strand, within Rv0178 at 209.574 kb on + strand, within Rv0178 at 209.574 kb on + strand, within Rv0178 at 209.604 kb on + strand at 209.605 kb on - strand at 209.670 kb on + strand at 209.670 kb on + strand at 209.705 kb on - strand at 209.914 kb on + strand, within Rv0179c at 209.915 kb on - strand, within Rv0179c at 209.935 kb on + strand, within Rv0179c at 209.935 kb on + strand, within Rv0179c at 209.935 kb on + strand, within Rv0179c at 209.935 kb on + strand, within Rv0179c at 209.935 kb on + strand, within Rv0179c at 209.936 kb on - strand, within Rv0179c at 209.936 kb on - strand, within Rv0179c at 209.936 kb on - strand, within Rv0179c at 209.936 kb on - strand, within Rv0179c at 209.936 kb on - strand, within Rv0179c at 210.025 kb on - strand, within Rv0179c at 210.025 kb on - strand, within Rv0179c at 210.103 kb on + strand, within Rv0179c at 210.103 kb on + strand, within Rv0179c at 210.133 kb on + strand, within Rv0179c at 210.278 kb on - strand, within Rv0179c at 210.278 kb on - strand, within Rv0179c at 210.380 kb on + strand, within Rv0179c at 210.381 kb on - strand, within Rv0179c at 210.395 kb on + strand, within Rv0179c at 210.498 kb on + strand, within Rv0179c at 210.499 kb on - strand, within Rv0179c at 210.565 kb on + strand, within Rv0179c at 210.596 kb on + strand, within Rv0179c at 210.596 kb on + strand, within Rv0179c at 210.620 kb on - strand, within Rv0179c at 210.620 kb on - strand, within Rv0179c at 210.628 kb on + strand, within Rv0179c at 210.629 kb on - strand, within Rv0179c at 210.894 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Clofazimine 0.072 ug/mL remove 208,726 + Rv0177 0.56 +0.0 208,827 + Rv0177 0.74 +0.4 208,828 - Rv0177 0.74 +0.4 209,247 + Rv0178 0.42 -0.5 209,460 - Rv0178 0.71 -2.0 209,521 - Rv0178 0.79 -1.0 209,574 + Rv0178 0.87 -1.4 209,574 + Rv0178 0.87 -1.4 209,574 + Rv0178 0.87 -2.2 209,574 + Rv0178 0.87 -0.3 209,574 + Rv0178 0.87 -0.1 209,604 + -1.3 209,605 - -2.3 209,670 + -0.0 209,670 + +0.3 209,705 - -0.1 209,914 + Rv0179c 0.19 +0.5 209,915 - Rv0179c 0.19 -0.4 209,935 + Rv0179c 0.21 -0.5 209,935 + Rv0179c 0.21 -0.2 209,935 + Rv0179c 0.21 -1.4 209,935 + Rv0179c 0.21 -0.9 209,935 + Rv0179c 0.21 -0.6 209,936 - Rv0179c 0.21 +2.0 209,936 - Rv0179c 0.21 -1.9 209,936 - Rv0179c 0.21 -1.4 209,936 - Rv0179c 0.21 -0.4 209,936 - Rv0179c 0.21 -1.4 210,025 - Rv0179c 0.29 -0.6 210,025 - Rv0179c 0.29 -0.2 210,103 + Rv0179c 0.36 -0.5 210,103 + Rv0179c 0.36 -0.5 210,133 + Rv0179c 0.39 +2.0 210,278 - Rv0179c 0.52 +0.0 210,278 - Rv0179c 0.52 -1.3 210,380 + Rv0179c 0.61 +0.2 210,381 - Rv0179c 0.61 +1.0 210,395 + Rv0179c 0.62 -0.3 210,498 + Rv0179c 0.72 +0.7 210,499 - Rv0179c 0.72 +2.0 210,565 + Rv0179c 0.78 -0.3 210,596 + Rv0179c 0.80 -0.3 210,596 + Rv0179c 0.80 -1.0 210,620 - Rv0179c 0.83 -0.7 210,620 - Rv0179c 0.83 -0.9 210,628 + Rv0179c 0.83 -0.8 210,629 - Rv0179c 0.83 -0.7 210,894 - -0.6
Or see this region's nucleotide sequence