Experiment: Lactate-Sulfate (60-30 mM) + 0.1% Yeast Extract (MoYLS4)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0638 and tRNA-Glu are separated by 488 nucleotides tRNA-Glu and pomB are separated by 217 nucleotides pomB and pomA are separated by 3 nucleotides pomA and DVU0641 are separated by 0 nucleotides
DVU0638: DVU0638 - membrane protein, putative (TIGR), at 707,913 to 708,779
DVU0638
DVU_tRNA-Glu-2: tRNA-Glu - tRNA with anticodon TTC for Glu (VIMSS-AUTO), at 709,268 to 709,344
tRNA-Glu
DVU0639: pomB - chemotaxis protein PomB (TIGR), at 709,562 to 710,335
pomB
DVU0640: pomA - chemotaxis protein PomA (TIGR), at 710,339 to 711,091
pomA
DVU0641: DVU0641 - conserved hypothetical protein (TIGR), at 711,092 to 712,240
DVU0641
Position (kb) 709
710
711 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 708.742 kb on + strand at 708.924 kb on + strand at 708.934 kb on - strand at 708.951 kb on + strand at 708.959 kb on - strand at 708.987 kb on + strand at 709.001 kb on - strand at 709.131 kb on + strand at 709.133 kb on + strand at 709.141 kb on - strand at 709.141 kb on - strand at 709.141 kb on - strand at 709.141 kb on - strand at 709.144 kb on + strand at 709.166 kb on - strand at 709.441 kb on + strand at 709.442 kb on + strand at 709.453 kb on + strand at 709.560 kb on + strand at 709.708 kb on + strand, within pomB at 709.807 kb on + strand, within pomB at 709.851 kb on - strand, within pomB at 709.924 kb on + strand, within pomB at 710.010 kb on + strand, within pomB at 710.020 kb on + strand, within pomB at 710.134 kb on + strand, within pomB at 710.191 kb on - strand, within pomB at 710.197 kb on - strand, within pomB at 710.225 kb on - strand, within pomB at 710.372 kb on + strand at 710.380 kb on - strand at 710.409 kb on + strand at 710.411 kb on + strand at 710.444 kb on - strand, within pomA at 710.444 kb on - strand, within pomA at 710.444 kb on - strand, within pomA at 710.602 kb on + strand, within pomA at 710.651 kb on + strand, within pomA at 710.678 kb on - strand, within pomA at 710.682 kb on - strand, within pomA at 710.725 kb on - strand, within pomA at 710.732 kb on - strand, within pomA at 710.766 kb on - strand, within pomA at 710.771 kb on - strand, within pomA at 710.869 kb on + strand, within pomA at 710.872 kb on - strand, within pomA at 710.882 kb on - strand, within pomA at 710.914 kb on + strand, within pomA at 710.919 kb on + strand, within pomA at 710.922 kb on - strand, within pomA at 711.222 kb on - strand, within DVU0641
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-Sulfate (60-30 mM) + 0.1% Yeast Extract (MoYLS4) remove 708,742 + -0.1 708,924 + +0.1 708,934 - -0.2 708,951 + -0.5 708,959 - -0.9 708,987 + +0.0 709,001 - -0.1 709,131 + -0.6 709,133 + -0.4 709,141 - +0.0 709,141 - -0.6 709,141 - +0.6 709,141 - +0.1 709,144 + +0.6 709,166 - -0.1 709,441 + +0.2 709,442 + -3.1 709,453 + +0.3 709,560 + -0.4 709,708 + pomB DVU0639 0.19 +0.3 709,807 + pomB DVU0639 0.32 +0.3 709,851 - pomB DVU0639 0.37 -0.2 709,924 + pomB DVU0639 0.47 -0.1 710,010 + pomB DVU0639 0.58 +0.4 710,020 + pomB DVU0639 0.59 -0.1 710,134 + pomB DVU0639 0.74 -0.5 710,191 - pomB DVU0639 0.81 -0.8 710,197 - pomB DVU0639 0.82 -0.0 710,225 - pomB DVU0639 0.86 +0.2 710,372 + -0.2 710,380 - +0.2 710,409 + -0.6 710,411 + -0.2 710,444 - pomA DVU0640 0.14 +1.3 710,444 - pomA DVU0640 0.14 -0.1 710,444 - pomA DVU0640 0.14 +0.8 710,602 + pomA DVU0640 0.35 -0.2 710,651 + pomA DVU0640 0.41 -1.0 710,678 - pomA DVU0640 0.45 -0.1 710,682 - pomA DVU0640 0.46 +0.1 710,725 - pomA DVU0640 0.51 +0.1 710,732 - pomA DVU0640 0.52 +0.0 710,766 - pomA DVU0640 0.57 +0.0 710,771 - pomA DVU0640 0.57 +0.7 710,869 + pomA DVU0640 0.70 +0.6 710,872 - pomA DVU0640 0.71 -0.0 710,882 - pomA DVU0640 0.72 -0.5 710,914 + pomA DVU0640 0.76 -1.9 710,919 + pomA DVU0640 0.77 -0.3 710,922 - pomA DVU0640 0.77 +1.0 711,222 - DVU0641 0.11 +0.8
Or see this region's nucleotide sequence