Experiment: 7H9 with Linezolid 0.44 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0856 and Rv0857 are separated by 27 nucleotides Rv0857 and Rv0858c overlap by 4 nucleotides Rv0858c and Rv0859 are separated by 156 nucleotides
Rv0856: Rv0856 - Conserved hypothetical protein, at 952,825 to 953,229
Rv0856
Rv0857: Rv0857 - Conserved hypothetical protein, at 953,257 to 953,730
Rv0857
Rv0858c: Rv0858c - Probable N-succinyldiaminopimelate aminotransferase DapC (DAP-at), at 953,727 to 954,920
Rv0858c
Rv0859: Rv0859 - Possible acyl-CoA thiolase FadA, at 955,077 to 956,288
Rv0859
Position (kb) 953
954
955 Strain fitness (log2 ratio) -2
-1
0
1
2 at 952.778 kb on - strand at 952.778 kb on - strand at 952.897 kb on + strand, within Rv0856 at 952.898 kb on - strand, within Rv0856 at 952.898 kb on - strand, within Rv0856 at 952.898 kb on - strand, within Rv0856 at 952.975 kb on + strand, within Rv0856 at 952.975 kb on + strand, within Rv0856 at 952.976 kb on - strand, within Rv0856 at 952.976 kb on - strand, within Rv0856 at 953.047 kb on + strand, within Rv0856 at 953.048 kb on - strand, within Rv0856 at 953.048 kb on - strand, within Rv0856 at 953.048 kb on - strand, within Rv0856 at 953.048 kb on - strand, within Rv0856 at 953.266 kb on - strand at 953.266 kb on - strand at 953.273 kb on + strand at 953.273 kb on + strand at 953.274 kb on - strand at 953.474 kb on + strand, within Rv0857 at 953.554 kb on + strand, within Rv0857 at 953.967 kb on + strand, within Rv0858c at 953.984 kb on - strand, within Rv0858c at 954.134 kb on - strand, within Rv0858c at 954.309 kb on + strand, within Rv0858c at 954.320 kb on - strand, within Rv0858c at 954.514 kb on - strand, within Rv0858c at 954.676 kb on + strand, within Rv0858c at 954.752 kb on - strand, within Rv0858c at 954.999 kb on + strand at 955.019 kb on + strand at 955.019 kb on + strand at 955.019 kb on + strand at 955.019 kb on + strand at 955.828 kb on + strand, within Rv0859
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Linezolid 0.44 ug/mL remove 952,778 - -0.2 952,778 - -1.2 952,897 + Rv0856 0.18 +0.3 952,898 - Rv0856 0.18 -0.5 952,898 - Rv0856 0.18 +0.3 952,898 - Rv0856 0.18 -0.7 952,975 + Rv0856 0.37 +0.4 952,975 + Rv0856 0.37 -0.3 952,976 - Rv0856 0.37 +0.1 952,976 - Rv0856 0.37 -0.4 953,047 + Rv0856 0.55 +0.4 953,048 - Rv0856 0.55 -0.3 953,048 - Rv0856 0.55 +0.1 953,048 - Rv0856 0.55 -1.9 953,048 - Rv0856 0.55 -0.3 953,266 - +0.4 953,266 - +1.8 953,273 + +1.0 953,273 + -0.1 953,274 - -0.3 953,474 + Rv0857 0.46 -1.0 953,554 + Rv0857 0.63 -0.4 953,967 + Rv0858c 0.20 +0.2 953,984 - Rv0858c 0.22 +1.0 954,134 - Rv0858c 0.34 -0.3 954,309 + Rv0858c 0.49 +0.1 954,320 - Rv0858c 0.50 +0.3 954,514 - Rv0858c 0.66 +1.3 954,676 + Rv0858c 0.79 +1.2 954,752 - Rv0858c 0.86 -0.1 954,999 + -0.1 955,019 + +1.8 955,019 + +0.4 955,019 + -0.4 955,019 + +1.8 955,828 + Rv0859 0.62 +1.4
Or see this region's nucleotide sequence