Experiment: 7H9 with Linezolid 0.44 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0613c and Rv0614 overlap by 160 nucleotides Rv0614 and Rv0615 overlap by 4 nucleotides Rv0615 and Rv0616c overlap by 4 nucleotides Rv0616c and Rv0616A overlap by 69 nucleotides Rv0616A and Rv0617 overlap by 4 nucleotides
Rv0613c: Rv0613c - Unknown protein, at 706,948 to 709,515
Rv0613c
Rv0614: Rv0614 - Conserved hypothetical protein, at 709,356 to 710,348
Rv0614
Rv0615: Rv0615 - Probable integral membrane protein, at 710,345 to 710,587
Rv0615
Rv0616c: Rv0616c - Hypothetical protein, at 710,584 to 710,850
Rv0616c
Rv0616A: Rv0616A - Possible antitoxin VapB29, at 710,782 to 711,009
Rv0616A
Rv0617: Rv0617 - Possible toxin VapC29. Contains PIN domain., at 711,006 to 711,407
Rv0617
Position (kb) 709
710
711 Strain fitness (log2 ratio) -1
0
1
2 at 708.705 kb on - strand, within Rv0613c at 708.705 kb on - strand, within Rv0613c at 709.202 kb on + strand, within Rv0613c at 709.300 kb on + strand at 709.301 kb on - strand at 709.527 kb on + strand, within Rv0614 at 709.527 kb on + strand, within Rv0614 at 709.527 kb on + strand, within Rv0614 at 709.527 kb on + strand, within Rv0614 at 709.528 kb on - strand, within Rv0614 at 709.750 kb on + strand, within Rv0614 at 709.751 kb on - strand, within Rv0614 at 709.991 kb on + strand, within Rv0614 at 710.028 kb on - strand, within Rv0614 at 710.071 kb on + strand, within Rv0614 at 710.072 kb on - strand, within Rv0614 at 710.157 kb on + strand, within Rv0614 at 710.323 kb on + strand at 710.323 kb on + strand at 710.355 kb on + strand at 710.355 kb on + strand at 710.435 kb on + strand, within Rv0615 at 710.436 kb on - strand, within Rv0615 at 710.586 kb on - strand at 710.790 kb on + strand at 710.790 kb on + strand at 710.993 kb on + strand at 711.300 kb on + strand, within Rv0617 at 711.301 kb on - strand, within Rv0617 at 711.301 kb on - strand, within Rv0617
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Linezolid 0.44 ug/mL remove 708,705 - Rv0613c 0.68 -0.0 708,705 - Rv0613c 0.68 +0.5 709,202 + Rv0613c 0.88 +1.4 709,300 + -1.4 709,301 - -1.1 709,527 + Rv0614 0.17 -0.2 709,527 + Rv0614 0.17 -0.2 709,527 + Rv0614 0.17 +0.2 709,527 + Rv0614 0.17 -0.3 709,528 - Rv0614 0.17 +1.8 709,750 + Rv0614 0.40 +0.4 709,751 - Rv0614 0.40 +0.2 709,991 + Rv0614 0.64 -0.3 710,028 - Rv0614 0.68 -0.3 710,071 + Rv0614 0.72 +1.0 710,072 - Rv0614 0.72 +0.4 710,157 + Rv0614 0.81 -0.4 710,323 + +0.0 710,323 + -0.8 710,355 + -0.4 710,355 + -0.3 710,435 + Rv0615 0.37 -0.3 710,436 - Rv0615 0.37 -1.1 710,586 - -0.1 710,790 + +1.4 710,790 + -0.2 710,993 + +0.2 711,300 + Rv0617 0.73 +1.8 711,301 - Rv0617 0.73 -0.9 711,301 - Rv0617 0.73 +0.8
Or see this region's nucleotide sequence