Experiment: 7H9 with Linezolid 0.44 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0261c and Rv0262c are separated by 140 nucleotides Rv0262c and Rv0263c are separated by 9 nucleotides Rv0263c and Rv0264c are separated by 16 nucleotides Rv0264c and Rv0265c are separated by 95 nucleotides
Rv0261c: Rv0261c - Probable integral membrane nitrite extrusion protein NarK3 (nitrite facilitator), at 312,759 to 314,168
Rv0261c
Rv0262c: Rv0262c - Aminoglycoside 2'-N-acetyltransferase Aac (Aac(2')-IC), at 314,309 to 314,854
Rv0262c
Rv0263c: Rv0263c - Conserved hypothetical protein, at 314,864 to 315,766
Rv0263c
Rv0264c: Rv0264c - Conserved hypothetical protein, at 315,783 to 316,415
Rv0264c
Rv0265c: Rv0265c - Probable periplasmic iron-transport lipoprotein, at 316,511 to 317,503
Rv0265c
Position (kb) 314
315
316 Strain fitness (log2 ratio) -2
-1
0
1 at 313.918 kb on + strand, within Rv0261c at 314.169 kb on - strand at 314.179 kb on - strand at 314.310 kb on + strand at 314.478 kb on + strand, within Rv0262c at 314.523 kb on + strand, within Rv0262c at 314.617 kb on - strand, within Rv0262c at 314.617 kb on - strand, within Rv0262c at 314.643 kb on + strand, within Rv0262c at 314.880 kb on - strand at 314.997 kb on + strand, within Rv0263c at 315.117 kb on - strand, within Rv0263c at 315.178 kb on + strand, within Rv0263c at 315.178 kb on + strand, within Rv0263c at 315.424 kb on - strand, within Rv0263c at 315.908 kb on - strand, within Rv0264c at 315.908 kb on - strand, within Rv0264c at 315.908 kb on - strand, within Rv0264c at 315.909 kb on + strand, within Rv0264c at 316.502 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Linezolid 0.44 ug/mL remove 313,918 + Rv0261c 0.82 -0.3 314,169 - -1.0 314,179 - +0.4 314,310 + -0.5 314,478 + Rv0262c 0.31 -0.5 314,523 + Rv0262c 0.39 -0.8 314,617 - Rv0262c 0.56 +0.2 314,617 - Rv0262c 0.56 -0.3 314,643 + Rv0262c 0.61 -0.8 314,880 - -1.3 314,997 + Rv0263c 0.15 -1.9 315,117 - Rv0263c 0.28 -0.2 315,178 + Rv0263c 0.35 -0.4 315,178 + Rv0263c 0.35 -1.0 315,424 - Rv0263c 0.62 -0.5 315,908 - Rv0264c 0.20 -0.2 315,908 - Rv0264c 0.20 -0.4 315,908 - Rv0264c 0.20 +0.7 315,909 + Rv0264c 0.20 -0.9 316,502 - -0.6
Or see this region's nucleotide sequence