Experiment: Lactate-Sulfate (60-30 mM) + 0.1% Yeast Extract (MoYLS4)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0036 and DVUA0037 are separated by 203 nucleotides DVUA0037 and b0983 overlap by 1 nucleotides b0983 and DVUA0039 are separated by 0 nucleotides
DVUA0036: DVUA0036 - TPR domain protein (TIGR), at 41,239 to 43,986
DVUA0036
DVUA0037: DVUA0037 - sugar transferase domain protein (TIGR), at 44,190 to 45,644
DVUA0037
DVUA0038: b0983 - capsular polysaccharide transport protein (TIGR), at 45,644 to 46,450
b0983
DVUA0039: DVUA0039 - chain length determinant family protein (TIGR), at 46,451 to 47,953
DVUA0039
Position (kb) 44
45
46 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 43.418 kb on + strand, within DVUA0036 at 43.473 kb on - strand, within DVUA0036 at 43.473 kb on - strand, within DVUA0036 at 43.477 kb on + strand, within DVUA0036 at 43.499 kb on + strand, within DVUA0036 at 43.507 kb on - strand, within DVUA0036 at 43.526 kb on - strand, within DVUA0036 at 43.544 kb on - strand, within DVUA0036 at 43.554 kb on - strand, within DVUA0036 at 43.567 kb on + strand, within DVUA0036 at 43.638 kb on - strand, within DVUA0036 at 43.729 kb on + strand at 43.737 kb on - strand at 43.737 kb on - strand at 43.737 kb on - strand at 43.754 kb on + strand at 43.772 kb on - strand at 43.805 kb on + strand at 43.880 kb on - strand at 43.880 kb on - strand at 43.880 kb on - strand at 43.880 kb on - strand at 43.903 kb on + strand at 43.926 kb on - strand at 44.003 kb on - strand at 44.039 kb on - strand at 44.159 kb on - strand at 44.172 kb on - strand at 44.314 kb on - strand at 44.351 kb on + strand, within DVUA0037 at 44.428 kb on + strand, within DVUA0037 at 44.519 kb on + strand, within DVUA0037 at 44.571 kb on + strand, within DVUA0037 at 44.571 kb on + strand, within DVUA0037 at 44.582 kb on + strand, within DVUA0037 at 44.616 kb on - strand, within DVUA0037 at 44.650 kb on - strand, within DVUA0037 at 44.673 kb on + strand, within DVUA0037 at 44.673 kb on + strand, within DVUA0037 at 44.676 kb on - strand, within DVUA0037 at 44.707 kb on + strand, within DVUA0037 at 44.715 kb on - strand, within DVUA0037 at 44.849 kb on + strand, within DVUA0037 at 44.865 kb on + strand, within DVUA0037 at 44.872 kb on + strand, within DVUA0037 at 44.882 kb on - strand, within DVUA0037 at 44.895 kb on + strand, within DVUA0037 at 44.944 kb on + strand, within DVUA0037 at 44.946 kb on + strand, within DVUA0037 at 44.978 kb on - strand, within DVUA0037 at 45.012 kb on + strand, within DVUA0037 at 45.133 kb on - strand, within DVUA0037 at 45.169 kb on + strand, within DVUA0037 at 45.177 kb on - strand, within DVUA0037 at 45.221 kb on - strand, within DVUA0037 at 45.222 kb on - strand, within DVUA0037 at 45.232 kb on - strand, within DVUA0037 at 45.238 kb on - strand, within DVUA0037 at 45.265 kb on - strand, within DVUA0037 at 45.423 kb on + strand, within DVUA0037 at 45.704 kb on - strand at 45.804 kb on + strand, within b0983 at 45.812 kb on - strand, within b0983 at 45.842 kb on + strand, within b0983 at 45.842 kb on + strand, within b0983 at 45.850 kb on - strand, within b0983 at 45.859 kb on + strand, within b0983 at 45.860 kb on + strand, within b0983 at 45.901 kb on - strand, within b0983 at 45.960 kb on + strand, within b0983 at 46.093 kb on - strand, within b0983 at 46.227 kb on + strand, within b0983 at 46.234 kb on - strand, within b0983 at 46.243 kb on + strand, within b0983 at 46.245 kb on + strand, within b0983 at 46.250 kb on + strand, within b0983 at 46.267 kb on + strand, within b0983 at 46.280 kb on + strand, within b0983 at 46.345 kb on + strand, within b0983 at 46.574 kb on - strand at 46.577 kb on + strand at 46.587 kb on + strand at 46.632 kb on + strand, within DVUA0039
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-Sulfate (60-30 mM) + 0.1% Yeast Extract (MoYLS4) remove 43,418 + DVUA0036 0.79 -0.3 43,473 - DVUA0036 0.81 -0.2 43,473 - DVUA0036 0.81 -0.1 43,477 + DVUA0036 0.81 +0.1 43,499 + DVUA0036 0.82 -0.1 43,507 - DVUA0036 0.83 +0.3 43,526 - DVUA0036 0.83 -0.1 43,544 - DVUA0036 0.84 -0.9 43,554 - DVUA0036 0.84 -0.1 43,567 + DVUA0036 0.85 +0.2 43,638 - DVUA0036 0.87 -1.5 43,729 + +0.1 43,737 - +0.9 43,737 - +0.0 43,737 - -0.2 43,754 + -0.5 43,772 - +0.7 43,805 + +0.4 43,880 - +0.2 43,880 - -0.1 43,880 - -0.7 43,880 - -0.1 43,903 + +0.4 43,926 - +0.1 44,003 - +0.1 44,039 - -0.3 44,159 - -0.2 44,172 - +0.1 44,314 - +0.3 44,351 + DVUA0037 0.11 -2.9 44,428 + DVUA0037 0.16 -0.1 44,519 + DVUA0037 0.23 -0.3 44,571 + DVUA0037 0.26 -0.5 44,571 + DVUA0037 0.26 -0.6 44,582 + DVUA0037 0.27 -0.1 44,616 - DVUA0037 0.29 -0.0 44,650 - DVUA0037 0.32 -0.1 44,673 + DVUA0037 0.33 -0.3 44,673 + DVUA0037 0.33 -0.8 44,676 - DVUA0037 0.33 -0.6 44,707 + DVUA0037 0.36 -0.0 44,715 - DVUA0037 0.36 +0.2 44,849 + DVUA0037 0.45 -0.1 44,865 + DVUA0037 0.46 -0.3 44,872 + DVUA0037 0.47 -0.7 44,882 - DVUA0037 0.48 -0.2 44,895 + DVUA0037 0.48 -1.7 44,944 + DVUA0037 0.52 -0.6 44,946 + DVUA0037 0.52 -1.4 44,978 - DVUA0037 0.54 -0.3 45,012 + DVUA0037 0.56 -0.2 45,133 - DVUA0037 0.65 -1.2 45,169 + DVUA0037 0.67 -0.1 45,177 - DVUA0037 0.68 -0.3 45,221 - DVUA0037 0.71 -0.5 45,222 - DVUA0037 0.71 -0.8 45,232 - DVUA0037 0.72 -0.2 45,238 - DVUA0037 0.72 -0.5 45,265 - DVUA0037 0.74 -0.5 45,423 + DVUA0037 0.85 +0.1 45,704 - -0.5 45,804 + b0983 DVUA0038 0.20 +0.1 45,812 - b0983 DVUA0038 0.21 +0.3 45,842 + b0983 DVUA0038 0.25 +0.1 45,842 + b0983 DVUA0038 0.25 +0.4 45,850 - b0983 DVUA0038 0.26 +0.3 45,859 + b0983 DVUA0038 0.27 +0.5 45,860 + b0983 DVUA0038 0.27 -0.4 45,901 - b0983 DVUA0038 0.32 -0.0 45,960 + b0983 DVUA0038 0.39 +0.3 46,093 - b0983 DVUA0038 0.56 -0.2 46,227 + b0983 DVUA0038 0.72 -0.3 46,234 - b0983 DVUA0038 0.73 -0.9 46,243 + b0983 DVUA0038 0.74 +0.0 46,245 + b0983 DVUA0038 0.74 +0.5 46,250 + b0983 DVUA0038 0.75 -0.7 46,267 + b0983 DVUA0038 0.77 -0.0 46,280 + b0983 DVUA0038 0.79 -0.0 46,345 + b0983 DVUA0038 0.87 -0.2 46,574 - -0.3 46,577 + +0.2 46,587 + +0.0 46,632 + DVUA0039 0.12 +0.4
Or see this region's nucleotide sequence