Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0064

Experiment: Lactate-Sulfate (60-50 mM) minimal (LS4D)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0062 and DVU0063 are separated by 29 nucleotidesDVU0063 and DVU0064 are separated by 88 nucleotidesDVU0064 and DVU0065 are separated by 251 nucleotides DVU0062: DVU0062 - RND efflux system, outer membrane protein, NodT family (TIGR), at 73,877 to 75,391 DVU0062 DVU0063: DVU0063 - transcriptional regulator, MarR family (TIGR), at 75,421 to 75,861 DVU0063 DVU0064: DVU0064 - hypothetical protein (TIGR), at 75,950 to 76,858 DVU0064 DVU0065: DVU0065 - hypothetical protein (TIGR), at 77,110 to 77,907 DVU0065 Position (kb) 75 76 77Strain fitness (log2 ratio) -2 -1 0 1at 74.994 kb on + strand, within DVU0062at 75.365 kb on - strandat 75.365 kb on - strandat 75.385 kb on + strandat 75.544 kb on - strand, within DVU0063at 75.594 kb on + strand, within DVU0063at 75.602 kb on - strand, within DVU0063at 75.604 kb on - strand, within DVU0063at 75.604 kb on - strand, within DVU0063at 75.711 kb on + strand, within DVU0063at 75.811 kb on + strand, within DVU0063at 75.827 kb on + strandat 75.833 kb on - strandat 75.861 kb on + strandat 75.939 kb on - strandat 75.953 kb on - strandat 76.051 kb on + strand, within DVU0064at 76.210 kb on + strand, within DVU0064at 76.269 kb on - strand, within DVU0064at 76.271 kb on + strand, within DVU0064at 76.313 kb on + strand, within DVU0064at 76.320 kb on + strand, within DVU0064at 76.320 kb on + strand, within DVU0064at 76.366 kb on + strand, within DVU0064at 76.381 kb on + strand, within DVU0064at 76.388 kb on + strand, within DVU0064at 76.468 kb on + strand, within DVU0064at 76.474 kb on + strand, within DVU0064at 76.660 kb on + strand, within DVU0064at 76.675 kb on - strand, within DVU0064at 76.684 kb on + strand, within DVU0064at 76.684 kb on + strand, within DVU0064at 76.699 kb on - strand, within DVU0064at 76.712 kb on - strand, within DVU0064at 76.747 kb on + strand, within DVU0064at 76.868 kb on + strandat 76.913 kb on + strandat 77.038 kb on + strandat 77.095 kb on + strandat 77.116 kb on - strandat 77.143 kb on - strandat 77.143 kb on - strandat 77.223 kb on - strand, within DVU0065at 77.229 kb on + strand, within DVU0065at 77.255 kb on + strand, within DVU0065at 77.257 kb on + strand, within DVU0065at 77.262 kb on + strand, within DVU0065at 77.265 kb on - strand, within DVU0065at 77.265 kb on - strand, within DVU0065at 77.265 kb on - strand, within DVU0065at 77.310 kb on - strand, within DVU0065at 77.383 kb on - strand, within DVU0065at 77.387 kb on + strand, within DVU0065at 77.393 kb on - strand, within DVU0065at 77.395 kb on - strand, within DVU0065at 77.405 kb on - strand, within DVU0065at 77.552 kb on + strand, within DVU0065at 77.565 kb on - strand, within DVU0065at 77.566 kb on + strand, within DVU0065at 77.568 kb on - strand, within DVU0065at 77.616 kb on + strand, within DVU0065at 77.626 kb on + strand, within DVU0065at 77.629 kb on - strand, within DVU0065at 77.639 kb on + strand, within DVU0065at 77.653 kb on - strand, within DVU0065at 77.664 kb on + strand, within DVU0065at 77.665 kb on - strand, within DVU0065at 77.728 kb on + strand, within DVU0065at 77.754 kb on + strand, within DVU0065at 77.797 kb on + strand, within DVU0065at 77.815 kb on + strand, within DVU0065at 77.823 kb on - strand, within DVU0065at 77.844 kb on - strandat 77.851 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-Sulfate (60-50 mM) minimal (LS4D)
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74,994 + DVU0062 0.74 -1.4
75,365 - +1.0
75,365 - -0.1
75,385 + +0.4
75,544 - DVU0063 0.28 +0.2
75,594 + DVU0063 0.39 -0.3
75,602 - DVU0063 0.41 -0.3
75,604 - DVU0063 0.41 +0.2
75,604 - DVU0063 0.41 +0.3
75,711 + DVU0063 0.66 +0.1
75,811 + DVU0063 0.88 -0.3
75,827 + +0.1
75,833 - -0.4
75,861 + -0.1
75,939 - -0.1
75,953 - +0.1
76,051 + DVU0064 0.11 +1.1
76,210 + DVU0064 0.29 -0.0
76,269 - DVU0064 0.35 +0.4
76,271 + DVU0064 0.35 -0.3
76,313 + DVU0064 0.40 +0.1
76,320 + DVU0064 0.41 -0.3
76,320 + DVU0064 0.41 -0.4
76,366 + DVU0064 0.46 -0.2
76,381 + DVU0064 0.47 +0.6
76,388 + DVU0064 0.48 +0.5
76,468 + DVU0064 0.57 +0.5
76,474 + DVU0064 0.58 +0.9
76,660 + DVU0064 0.78 -0.1
76,675 - DVU0064 0.80 -0.7
76,684 + DVU0064 0.81 +0.3
76,684 + DVU0064 0.81 -0.1
76,699 - DVU0064 0.82 -0.9
76,712 - DVU0064 0.84 -0.8
76,747 + DVU0064 0.88 -0.9
76,868 + +0.4
76,913 + -1.5
77,038 + +1.1
77,095 + +1.2
77,116 - -0.4
77,143 - +0.6
77,143 - -1.4
77,223 - DVU0065 0.14 +0.2
77,229 + DVU0065 0.15 +0.4
77,255 + DVU0065 0.18 -0.6
77,257 + DVU0065 0.18 +0.3
77,262 + DVU0065 0.19 -0.2
77,265 - DVU0065 0.19 -2.0
77,265 - DVU0065 0.19 +0.8
77,265 - DVU0065 0.19 -0.8
77,310 - DVU0065 0.25 -0.3
77,383 - DVU0065 0.34 -0.6
77,387 + DVU0065 0.35 -1.8
77,393 - DVU0065 0.35 +0.2
77,395 - DVU0065 0.36 +0.2
77,405 - DVU0065 0.37 +1.1
77,552 + DVU0065 0.55 -0.2
77,565 - DVU0065 0.57 -0.0
77,566 + DVU0065 0.57 +0.4
77,568 - DVU0065 0.57 -0.1
77,616 + DVU0065 0.63 +0.2
77,626 + DVU0065 0.65 -0.3
77,629 - DVU0065 0.65 -0.1
77,639 + DVU0065 0.66 -0.1
77,653 - DVU0065 0.68 +0.3
77,664 + DVU0065 0.69 +0.1
77,665 - DVU0065 0.70 -0.5
77,728 + DVU0065 0.77 -0.1
77,754 + DVU0065 0.81 +0.3
77,797 + DVU0065 0.86 -0.7
77,815 + DVU0065 0.88 -0.3
77,823 - DVU0065 0.89 -0.1
77,844 - -0.0
77,851 - +0.6

Or see this region's nucleotide sequence