Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1175c

Experiment: 7H9 with Ethambutol 0.75 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Ethambutol 0.75 ug/mL
1,305,236	+		Rv1173	0.90	-0.3
1,305,236	+		Rv1173	0.90	+0.2
1,305,481	+				+1.0
1,305,670	+				-0.1
1,305,670	+				+1.9
1,305,671	-				-0.2
1,305,673	+				-0.1
1,305,673	+				+0.8
1,305,673	+				-0.1
1,305,715	+		Rv1174c	0.14	-1.4
1,305,715	+		Rv1174c	0.14	+1.5
1,305,716	-		Rv1174c	0.14	-0.7
1,305,716	-		Rv1174c	0.14	-0.2
1,305,800	-		Rv1174c	0.39	-0.4
1,305,867	+		Rv1174c	0.59	-0.1
1,305,868	-		Rv1174c	0.60	-2.0
1,305,870	+		Rv1174c	0.60	+0.7
1,305,870	+		Rv1174c	0.60	-0.3
1,305,870	+		Rv1174c	0.60	-0.1
1,305,870	+		Rv1174c	0.60	-0.4
1,305,870	+		Rv1174c	0.60	-0.4
1,305,870	+		Rv1174c	0.60	+0.1
1,305,871	-		Rv1174c	0.61	-1.3
1,305,871	-		Rv1174c	0.61	-0.3
1,305,871	-		Rv1174c	0.61	-1.2
1,305,871	-		Rv1174c	0.61	-2.0
1,305,896	+		Rv1174c	0.68	+1.2
1,306,003	+				-0.3
1,306,004	-				-0.2
1,306,004	-				-0.1
1,306,004	-				+1.3
1,306,024	-				+0.9
1,306,024	-				-0.3
1,306,037	+				+0.0
1,306,037	+				-0.5
1,306,038	-				-0.5
1,306,144	+				-0.4
1,306,203	+				-0.5
1,306,205	+				+0.4
1,306,294	+				+0.4
1,306,295	-				-0.3
1,306,295	-				-1.5
1,306,359	-				+1.2
1,306,359	-				-0.4
1,306,416	-		Rv1175c	0.11	-0.2
1,306,440	+		Rv1175c	0.12	+0.0
1,306,554	+		Rv1175c	0.17	-0.2
1,306,554	+		Rv1175c	0.17	-0.3
1,306,771	-		Rv1175c	0.28	-0.2
1,306,776	-		Rv1175c	0.28	+0.7
1,306,997	-		Rv1175c	0.39	-0.1
1,307,298	-		Rv1175c	0.54	+0.8
1,307,560	-		Rv1175c	0.67	+0.3
1,307,755	-		Rv1175c	0.77	-0.1
1,307,892	+		Rv1175c	0.83	-0.3
1,308,311	+		Rv1176c	0.15	-2.6
1,308,311	+		Rv1176c	0.15	+0.3
1,308,312	-		Rv1176c	0.16	-2.1
1,308,426	+		Rv1176c	0.36	-0.2
1,308,588	-		Rv1176c	0.64	+1.9
1,308,589	+		Rv1176c	0.64	+2.3
1,308,589	+		Rv1176c	0.64	+0.5
1,308,589	+		Rv1176c	0.64	-0.6
1,308,671	+		Rv1176c	0.79	+0.1
1,308,672	-		Rv1176c	0.79	+0.9
1,308,738	-				+0.3
1,308,831	+				-0.7
1,308,840	-				-0.4
1,308,840	-				-0.7
1,308,840	-				+0.6
1,308,850	+				-0.5
1,308,896	-				-0.2
1,308,898	+				-0.5
1,308,970	+				-0.3
1,308,970	+				-0.1
1,308,976	+				-0.3
1,308,976	+				-0.1
1,308,976	+				+1.3
1,308,976	+				-0.2