Experiment: 7H9 with Ethambutol 0.75 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0341 and Rv0342 are separated by 36 nucleotides Rv0342 and Rv0343 overlap by 4 nucleotides
Rv0341: Rv0341 - Isoniazid inductible gene protein IniB, at 409,362 to 410,801
Rv0341
Rv0342: Rv0342 - Isoniazid inductible gene protein IniA, at 410,838 to 412,760
Rv0342
Rv0343: Rv0343 - Isoniazid inductible gene protein IniC, at 412,757 to 414,238
Rv0343
Position (kb) 410
411
412
413 Strain fitness (log2 ratio) -1
0
1
2
3 at 410.207 kb on + strand, within Rv0341 at 410.207 kb on + strand, within Rv0341 at 410.207 kb on + strand, within Rv0341 at 410.208 kb on - strand, within Rv0341 at 410.208 kb on - strand, within Rv0341 at 410.862 kb on + strand at 410.862 kb on + strand at 410.863 kb on - strand at 410.967 kb on - strand at 411.001 kb on + strand at 411.001 kb on + strand at 411.001 kb on + strand at 411.002 kb on - strand at 411.002 kb on - strand at 411.004 kb on + strand at 411.005 kb on - strand at 411.131 kb on - strand, within Rv0342 at 411.166 kb on + strand, within Rv0342 at 411.166 kb on + strand, within Rv0342 at 411.166 kb on + strand, within Rv0342 at 411.167 kb on - strand, within Rv0342 at 411.167 kb on - strand, within Rv0342 at 411.171 kb on + strand, within Rv0342 at 411.171 kb on + strand, within Rv0342 at 411.172 kb on - strand, within Rv0342 at 411.363 kb on - strand, within Rv0342 at 411.549 kb on + strand, within Rv0342 at 411.663 kb on - strand, within Rv0342 at 411.809 kb on - strand, within Rv0342 at 411.821 kb on - strand, within Rv0342 at 411.976 kb on + strand, within Rv0342 at 411.977 kb on - strand, within Rv0342 at 411.977 kb on - strand, within Rv0342 at 412.280 kb on + strand, within Rv0342 at 412.308 kb on + strand, within Rv0342 at 412.309 kb on - strand, within Rv0342 at 412.412 kb on + strand, within Rv0342 at 412.412 kb on + strand, within Rv0342 at 412.412 kb on + strand, within Rv0342 at 412.412 kb on + strand, within Rv0342 at 412.412 kb on + strand, within Rv0342 at 412.412 kb on + strand, within Rv0342 at 412.412 kb on + strand, within Rv0342 at 412.413 kb on - strand, within Rv0342 at 412.413 kb on - strand, within Rv0342 at 412.826 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ethambutol 0.75 ug/mL remove 410,207 + Rv0341 0.59 -0.9 410,207 + Rv0341 0.59 +0.1 410,207 + Rv0341 0.59 +0.1 410,208 - Rv0341 0.59 -1.1 410,208 - Rv0341 0.59 -0.8 410,862 + -0.5 410,862 + +0.5 410,863 - -0.6 410,967 - -0.7 411,001 + -1.1 411,001 + +0.6 411,001 + -0.1 411,002 - -0.9 411,002 - -0.2 411,004 + -0.3 411,005 - +2.9 411,131 - Rv0342 0.15 -0.5 411,166 + Rv0342 0.17 +0.9 411,166 + Rv0342 0.17 -0.5 411,166 + Rv0342 0.17 -0.5 411,167 - Rv0342 0.17 -0.3 411,167 - Rv0342 0.17 +0.2 411,171 + Rv0342 0.17 -0.8 411,171 + Rv0342 0.17 -0.4 411,172 - Rv0342 0.17 -1.7 411,363 - Rv0342 0.27 +1.9 411,549 + Rv0342 0.37 -0.1 411,663 - Rv0342 0.43 -1.5 411,809 - Rv0342 0.50 -0.1 411,821 - Rv0342 0.51 -0.6 411,976 + Rv0342 0.59 -0.2 411,977 - Rv0342 0.59 +1.9 411,977 - Rv0342 0.59 +0.1 412,280 + Rv0342 0.75 +0.1 412,308 + Rv0342 0.76 -0.3 412,309 - Rv0342 0.76 -0.9 412,412 + Rv0342 0.82 +0.6 412,412 + Rv0342 0.82 -1.4 412,412 + Rv0342 0.82 -0.8 412,412 + Rv0342 0.82 -0.1 412,412 + Rv0342 0.82 -0.6 412,412 + Rv0342 0.82 -0.3 412,412 + Rv0342 0.82 +2.9 412,413 - Rv0342 0.82 -0.9 412,413 - Rv0342 0.82 -0.7 412,826 + +2.9
Or see this region's nucleotide sequence