Experiment: Lactate-Sulfate (60-50 mM) minimal (LS4D)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0882 and nrdH are separated by 273 nucleotides nrdH and ftrB overlap by 4 nucleotides ftrB and DVU0885 are separated by 441 nucleotides
DVU0882: DVU0882 - hypothetical protein (TIGR), at 973,743 to 974,207
DVU0882
DVU0883: nrdH - glutaredoxin, putative (TIGR), at 974,481 to 974,738
nrdH
DVU0884: ftrB - conserved hypothetical protein (TIGR), at 974,735 to 975,079
ftrB
DVU0885: DVU0885 - amidohydrolase family protein (TIGR), at 975,521 to 976,309
DVU0885
Position (kb) 974
975
976 Strain fitness (log2 ratio) -2
-1
0
1 at 973.854 kb on + strand, within DVU0882 at 973.892 kb on - strand, within DVU0882 at 973.936 kb on - strand, within DVU0882 at 973.999 kb on + strand, within DVU0882 at 974.000 kb on + strand, within DVU0882 at 974.062 kb on - strand, within DVU0882 at 974.086 kb on + strand, within DVU0882 at 974.091 kb on + strand, within DVU0882 at 974.107 kb on + strand, within DVU0882 at 974.115 kb on - strand, within DVU0882 at 974.117 kb on + strand, within DVU0882 at 974.146 kb on - strand, within DVU0882 at 974.204 kb on - strand at 974.235 kb on - strand at 974.267 kb on + strand at 974.321 kb on - strand at 974.368 kb on + strand at 974.375 kb on + strand at 974.404 kb on - strand at 974.407 kb on + strand at 974.407 kb on + strand at 974.513 kb on + strand, within nrdH at 974.519 kb on - strand, within nrdH at 974.521 kb on - strand, within nrdH at 974.538 kb on - strand, within nrdH at 974.647 kb on - strand, within nrdH at 974.647 kb on - strand, within nrdH at 974.709 kb on + strand, within nrdH at 974.772 kb on - strand, within ftrB at 974.814 kb on - strand, within ftrB at 974.822 kb on + strand, within ftrB at 974.884 kb on - strand, within ftrB at 974.920 kb on + strand, within ftrB at 974.928 kb on - strand, within ftrB at 974.929 kb on - strand, within ftrB at 975.027 kb on - strand, within ftrB at 975.027 kb on - strand, within ftrB at 975.250 kb on + strand at 975.399 kb on + strand at 975.399 kb on - strand at 975.412 kb on + strand at 975.420 kb on - strand at 975.593 kb on + strand at 975.685 kb on + strand, within DVU0885 at 975.691 kb on + strand, within DVU0885 at 975.692 kb on - strand, within DVU0885 at 975.740 kb on - strand, within DVU0885 at 975.740 kb on - strand, within DVU0885 at 975.753 kb on + strand, within DVU0885 at 975.768 kb on + strand, within DVU0885 at 975.951 kb on - strand, within DVU0885 at 975.966 kb on + strand, within DVU0885 at 975.995 kb on + strand, within DVU0885 at 976.001 kb on - strand, within DVU0885 at 976.001 kb on - strand, within DVU0885 at 976.045 kb on + strand, within DVU0885 at 976.067 kb on + strand, within DVU0885 at 976.074 kb on + strand, within DVU0885
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-Sulfate (60-50 mM) minimal (LS4D) remove 973,854 + DVU0882 0.24 -0.7 973,892 - DVU0882 0.32 +0.2 973,936 - DVU0882 0.42 -1.5 973,999 + DVU0882 0.55 +0.2 974,000 + DVU0882 0.55 -0.9 974,062 - DVU0882 0.69 -0.3 974,086 + DVU0882 0.74 -0.2 974,091 + DVU0882 0.75 +0.3 974,107 + DVU0882 0.78 +0.1 974,115 - DVU0882 0.80 -0.2 974,117 + DVU0882 0.80 +0.2 974,146 - DVU0882 0.87 +0.0 974,204 - -1.8 974,235 - +0.7 974,267 + -0.1 974,321 - +0.6 974,368 + +0.4 974,375 + +0.3 974,404 - +0.5 974,407 + +1.4 974,407 + +0.2 974,513 + nrdH DVU0883 0.12 +0.2 974,519 - nrdH DVU0883 0.15 +0.0 974,521 - nrdH DVU0883 0.16 -1.4 974,538 - nrdH DVU0883 0.22 +0.4 974,647 - nrdH DVU0883 0.64 -0.4 974,647 - nrdH DVU0883 0.64 -1.4 974,709 + nrdH DVU0883 0.88 +0.3 974,772 - ftrB DVU0884 0.11 +1.0 974,814 - ftrB DVU0884 0.23 +0.6 974,822 + ftrB DVU0884 0.25 -0.8 974,884 - ftrB DVU0884 0.43 +0.6 974,920 + ftrB DVU0884 0.54 +0.2 974,928 - ftrB DVU0884 0.56 -0.4 974,929 - ftrB DVU0884 0.56 +0.4 975,027 - ftrB DVU0884 0.85 +0.1 975,027 - ftrB DVU0884 0.85 -0.3 975,250 + -0.7 975,399 + -1.1 975,399 - +0.1 975,412 + -0.2 975,420 - +0.2 975,593 + -0.4 975,685 + DVU0885 0.21 -0.1 975,691 + DVU0885 0.22 -0.9 975,692 - DVU0885 0.22 -0.2 975,740 - DVU0885 0.28 -0.2 975,740 - DVU0885 0.28 -1.2 975,753 + DVU0885 0.29 -0.4 975,768 + DVU0885 0.31 -0.8 975,951 - DVU0885 0.54 +0.4 975,966 + DVU0885 0.56 -1.9 975,995 + DVU0885 0.60 +0.1 976,001 - DVU0885 0.61 +0.2 976,001 - DVU0885 0.61 -0.1 976,045 + DVU0885 0.66 +0.4 976,067 + DVU0885 0.69 +0.3 976,074 + DVU0885 0.70 -0.2
Or see this region's nucleotide sequence