Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0159c

Experiment: 7H9 with Ethambutol 0.75 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv0157 and Rv0157A are separated by 15 nucleotidesRv0157A and Rv0158 are separated by 161 nucleotidesRv0158 and Rv0159c are separated by 3 nucleotidesRv0159c and Rv0160c are separated by 91 nucleotides Rv0157: Rv0157 - Probable NAD(P) transhydrogenase (subunit beta) PntB [integral membrane protein] (pyridine nucleotide transhydrogenase subunit beta) (nicotinamide nucleotide transhydrogenase subunit beta), at 185,052 to 186,479 Rv0157 Rv0157A: Rv0157A - Conserved protein, at 186,495 to 186,623 Rv0157A Rv0158: Rv0158 - Probable transcriptional regulatory protein (possibly TetR-family), at 186,785 to 187,429 Rv0158 Rv0159c: Rv0159c - PE family protein PE3, at 187,433 to 188,839 Rv0159c Rv0160c: Rv0160c - PE family protein PE4, at 188,931 to 190,439 Rv0160c Position (kb) 187 188 189Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 186.477 kb on + strandat 186.478 kb on - strandat 186.478 kb on - strandat 186.508 kb on + strand, within Rv0157Aat 186.509 kb on - strand, within Rv0157Aat 186.781 kb on - strandat 186.814 kb on - strandat 186.853 kb on - strand, within Rv0158at 186.929 kb on + strand, within Rv0158at 186.930 kb on - strand, within Rv0158at 186.930 kb on - strand, within Rv0158at 186.935 kb on + strand, within Rv0158at 186.935 kb on + strand, within Rv0158at 186.935 kb on + strand, within Rv0158at 186.935 kb on + strand, within Rv0158at 186.936 kb on - strand, within Rv0158at 186.971 kb on + strand, within Rv0158at 187.043 kb on + strand, within Rv0158at 187.103 kb on + strand, within Rv0158at 187.121 kb on + strand, within Rv0158at 187.121 kb on + strand, within Rv0158at 187.121 kb on + strand, within Rv0158at 187.122 kb on - strand, within Rv0158at 187.185 kb on - strand, within Rv0158at 187.195 kb on - strand, within Rv0158at 187.195 kb on - strand, within Rv0158at 187.195 kb on - strand, within Rv0158at 187.235 kb on + strand, within Rv0158at 187.269 kb on - strand, within Rv0158at 187.292 kb on + strand, within Rv0158at 187.292 kb on + strand, within Rv0158at 187.551 kb on + strandat 187.557 kb on + strandat 187.557 kb on + strandat 187.557 kb on + strandat 187.557 kb on + strandat 187.558 kb on - strandat 187.558 kb on - strandat 187.558 kb on - strandat 187.558 kb on - strandat 187.558 kb on - strandat 187.558 kb on - strandat 187.561 kb on + strandat 187.561 kb on + strandat 187.562 kb on - strandat 187.562 kb on - strandat 187.562 kb on - strandat 187.562 kb on - strandat 187.569 kb on - strandat 187.598 kb on + strand, within Rv0159cat 187.598 kb on + strand, within Rv0159cat 187.599 kb on - strand, within Rv0159cat 187.599 kb on - strand, within Rv0159cat 187.599 kb on - strand, within Rv0159cat 187.599 kb on - strand, within Rv0159cat 187.599 kb on - strand, within Rv0159cat 187.599 kb on - strand, within Rv0159cat 187.601 kb on + strand, within Rv0159cat 187.602 kb on - strand, within Rv0159cat 187.694 kb on + strand, within Rv0159cat 187.694 kb on + strand, within Rv0159cat 187.694 kb on + strand, within Rv0159cat 187.695 kb on - strand, within Rv0159cat 187.710 kb on + strand, within Rv0159cat 187.710 kb on + strand, within Rv0159cat 187.717 kb on - strand, within Rv0159cat 187.730 kb on + strand, within Rv0159cat 187.730 kb on + strand, within Rv0159cat 187.731 kb on - strand, within Rv0159cat 187.739 kb on + strand, within Rv0159cat 187.739 kb on + strand, within Rv0159cat 187.776 kb on - strand, within Rv0159cat 187.776 kb on - strand, within Rv0159cat 187.833 kb on + strand, within Rv0159cat 187.833 kb on + strand, within Rv0159cat 187.833 kb on + strand, within Rv0159cat 187.833 kb on + strand, within Rv0159cat 187.833 kb on + strand, within Rv0159cat 187.833 kb on + strand, within Rv0159cat 187.833 kb on + strand, within Rv0159cat 187.834 kb on - strand, within Rv0159cat 187.834 kb on - strand, within Rv0159cat 187.834 kb on - strand, within Rv0159cat 187.834 kb on - strand, within Rv0159cat 187.836 kb on + strand, within Rv0159cat 187.836 kb on + strand, within Rv0159cat 187.836 kb on + strand, within Rv0159cat 187.836 kb on + strand, within Rv0159cat 187.836 kb on + strand, within Rv0159cat 187.837 kb on - strand, within Rv0159cat 187.837 kb on - strand, within Rv0159cat 187.837 kb on - strand, within Rv0159cat 187.911 kb on + strand, within Rv0159cat 187.964 kb on - strand, within Rv0159cat 187.964 kb on - strand, within Rv0159cat 187.992 kb on + strand, within Rv0159cat 187.993 kb on - strand, within Rv0159cat 188.001 kb on + strand, within Rv0159cat 188.001 kb on + strand, within Rv0159cat 188.001 kb on + strand, within Rv0159cat 188.013 kb on + strand, within Rv0159cat 188.013 kb on + strand, within Rv0159cat 188.013 kb on + strand, within Rv0159cat 188.013 kb on + strand, within Rv0159cat 188.014 kb on - strand, within Rv0159cat 188.014 kb on - strand, within Rv0159cat 188.014 kb on - strand, within Rv0159cat 188.020 kb on - strand, within Rv0159cat 188.020 kb on - strand, within Rv0159cat 188.020 kb on - strand, within Rv0159cat 188.020 kb on - strand, within Rv0159cat 188.082 kb on + strand, within Rv0159cat 188.094 kb on + strand, within Rv0159cat 188.094 kb on + strand, within Rv0159cat 188.094 kb on + strand, within Rv0159cat 188.128 kb on + strand, within Rv0159cat 188.129 kb on - strand, within Rv0159cat 188.131 kb on + strand, within Rv0159cat 188.132 kb on - strand, within Rv0159cat 188.191 kb on + strand, within Rv0159cat 188.202 kb on - strand, within Rv0159cat 188.367 kb on + strand, within Rv0159cat 188.443 kb on + strand, within Rv0159cat 188.444 kb on - strand, within Rv0159cat 188.548 kb on + strand, within Rv0159cat 188.548 kb on + strand, within Rv0159cat 188.548 kb on + strand, within Rv0159cat 188.549 kb on - strand, within Rv0159cat 188.642 kb on + strand, within Rv0159cat 188.833 kb on - strandat 188.833 kb on - strandat 188.995 kb on - strandat 188.995 kb on - strandat 188.995 kb on - strandat 189.023 kb on - strandat 189.061 kb on + strandat 189.061 kb on + strandat 189.061 kb on + strandat 189.062 kb on - strandat 189.062 kb on - strandat 189.062 kb on - strandat 189.062 kb on - strandat 189.160 kb on + strand, within Rv0160cat 189.220 kb on + strand, within Rv0160cat 189.221 kb on - strand, within Rv0160cat 189.248 kb on - strand, within Rv0160cat 189.364 kb on + strand, within Rv0160cat 189.364 kb on + strand, within Rv0160cat 189.364 kb on + strand, within Rv0160cat 189.364 kb on + strand, within Rv0160cat 189.364 kb on + strand, within Rv0160cat 189.364 kb on + strand, within Rv0160cat 189.364 kb on + strand, within Rv0160cat 189.365 kb on - strand, within Rv0160cat 189.365 kb on - strand, within Rv0160cat 189.365 kb on - strand, within Rv0160cat 189.365 kb on - strand, within Rv0160cat 189.365 kb on - strand, within Rv0160cat 189.365 kb on - strand, within Rv0160cat 189.368 kb on - strand, within Rv0160cat 189.384 kb on - strand, within Rv0160cat 189.386 kb on - strand, within Rv0160cat 189.445 kb on + strand, within Rv0160cat 189.460 kb on + strand, within Rv0160cat 189.460 kb on + strand, within Rv0160cat 189.461 kb on - strand, within Rv0160cat 189.547 kb on + strand, within Rv0160cat 189.547 kb on + strand, within Rv0160cat 189.570 kb on - strand, within Rv0160cat 189.617 kb on - strand, within Rv0160cat 189.617 kb on - strand, within Rv0160cat 189.686 kb on + strand, within Rv0160cat 189.731 kb on - strand, within Rv0160cat 189.731 kb on - strand, within Rv0160c

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Per-strain Table

Position Strand Gene LocusTag Fraction 7H9 with Ethambutol 0.75 ug/mL
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186,477 + -0.2
186,478 - +0.4
186,478 - -1.4
186,508 + Rv0157A 0.10 -0.0
186,509 - Rv0157A 0.11 -0.9
186,781 - -0.7
186,814 - -0.5
186,853 - Rv0158 0.11 -0.0
186,929 + Rv0158 0.22 -0.2
186,930 - Rv0158 0.22 -0.3
186,930 - Rv0158 0.22 -2.0
186,935 + Rv0158 0.23 -0.2
186,935 + Rv0158 0.23 +0.2
186,935 + Rv0158 0.23 -0.4
186,935 + Rv0158 0.23 -0.4
186,936 - Rv0158 0.23 -0.3
186,971 + Rv0158 0.29 +0.2
187,043 + Rv0158 0.40 +0.4
187,103 + Rv0158 0.49 -0.6
187,121 + Rv0158 0.52 -1.3
187,121 + Rv0158 0.52 -1.9
187,121 + Rv0158 0.52 -0.1
187,122 - Rv0158 0.52 -0.7
187,185 - Rv0158 0.62 -0.5
187,195 - Rv0158 0.64 +0.2
187,195 - Rv0158 0.64 +0.2
187,195 - Rv0158 0.64 -0.3
187,235 + Rv0158 0.70 -0.2
187,269 - Rv0158 0.75 +0.1
187,292 + Rv0158 0.79 -1.2
187,292 + Rv0158 0.79 -0.2
187,551 + -0.2
187,557 + +0.7
187,557 + -0.3
187,557 + +0.2
187,557 + +0.4
187,558 - +0.4
187,558 - +0.3
187,558 - -0.2
187,558 - -0.2
187,558 - -0.3
187,558 - -0.2
187,561 + +1.5
187,561 + +0.1
187,562 - -0.1
187,562 - -0.8
187,562 - -0.1
187,562 - +0.2
187,569 - +0.0
187,598 + Rv0159c 0.12 -1.2
187,598 + Rv0159c 0.12 -0.3
187,599 - Rv0159c 0.12 -0.6
187,599 - Rv0159c 0.12 +0.0
187,599 - Rv0159c 0.12 +1.0
187,599 - Rv0159c 0.12 +3.5
187,599 - Rv0159c 0.12 +0.7
187,599 - Rv0159c 0.12 +0.6
187,601 + Rv0159c 0.12 -0.5
187,602 - Rv0159c 0.12 +0.1
187,694 + Rv0159c 0.19 +1.5
187,694 + Rv0159c 0.19 +2.0
187,694 + Rv0159c 0.19 -0.1
187,695 - Rv0159c 0.19 -0.0
187,710 + Rv0159c 0.20 +0.9
187,710 + Rv0159c 0.20 -0.4
187,717 - Rv0159c 0.20 -0.1
187,730 + Rv0159c 0.21 -0.0
187,730 + Rv0159c 0.21 -0.4
187,731 - Rv0159c 0.21 +0.3
187,739 + Rv0159c 0.22 -0.2
187,739 + Rv0159c 0.22 +0.3
187,776 - Rv0159c 0.24 -0.5
187,776 - Rv0159c 0.24 +0.1
187,833 + Rv0159c 0.28 -0.4
187,833 + Rv0159c 0.28 -0.2
187,833 + Rv0159c 0.28 -0.2
187,833 + Rv0159c 0.28 -0.4
187,833 + Rv0159c 0.28 -0.0
187,833 + Rv0159c 0.28 +2.0
187,833 + Rv0159c 0.28 -0.4
187,834 - Rv0159c 0.29 -1.5
187,834 - Rv0159c 0.29 -0.5
187,834 - Rv0159c 0.29 -0.4
187,834 - Rv0159c 0.29 -0.2
187,836 + Rv0159c 0.29 -0.1
187,836 + Rv0159c 0.29 -0.8
187,836 + Rv0159c 0.29 -0.3
187,836 + Rv0159c 0.29 -0.7
187,836 + Rv0159c 0.29 +2.0
187,837 - Rv0159c 0.29 -0.5
187,837 - Rv0159c 0.29 +0.1
187,837 - Rv0159c 0.29 +0.0
187,911 + Rv0159c 0.34 +0.2
187,964 - Rv0159c 0.38 -0.7
187,964 - Rv0159c 0.38 -1.2
187,992 + Rv0159c 0.40 +0.1
187,993 - Rv0159c 0.40 -0.4
188,001 + Rv0159c 0.40 +0.3
188,001 + Rv0159c 0.40 -0.4
188,001 + Rv0159c 0.40 +0.3
188,013 + Rv0159c 0.41 -2.2
188,013 + Rv0159c 0.41 +0.1
188,013 + Rv0159c 0.41 +0.0
188,013 + Rv0159c 0.41 +0.1
188,014 - Rv0159c 0.41 -0.3
188,014 - Rv0159c 0.41 +1.3
188,014 - Rv0159c 0.41 -0.1
188,020 - Rv0159c 0.42 +0.4
188,020 - Rv0159c 0.42 -0.2
188,020 - Rv0159c 0.42 -0.2
188,020 - Rv0159c 0.42 -0.2
188,082 + Rv0159c 0.46 -0.2
188,094 + Rv0159c 0.47 -0.2
188,094 + Rv0159c 0.47 +0.4
188,094 + Rv0159c 0.47 -0.2
188,128 + Rv0159c 0.49 +0.3
188,129 - Rv0159c 0.49 -0.5
188,131 + Rv0159c 0.50 -1.0
188,132 - Rv0159c 0.50 -0.1
188,191 + Rv0159c 0.54 +1.4
188,202 - Rv0159c 0.55 -0.2
188,367 + Rv0159c 0.66 +1.4
188,443 + Rv0159c 0.72 +0.0
188,444 - Rv0159c 0.72 -0.0
188,548 + Rv0159c 0.79 -0.0
188,548 + Rv0159c 0.79 +0.6
188,548 + Rv0159c 0.79 -0.0
188,549 - Rv0159c 0.79 +1.5
188,642 + Rv0159c 0.86 +0.8
188,833 - -0.2
188,833 - +0.4
188,995 - -1.5
188,995 - +0.3
188,995 - +0.0
189,023 - -0.1
189,061 + -0.0
189,061 + -0.0
189,061 + -0.0
189,062 - -0.3
189,062 - -0.1
189,062 - -0.1
189,062 - +0.2
189,160 + Rv0160c 0.15 +1.0
189,220 + Rv0160c 0.19 -0.7
189,221 - Rv0160c 0.19 +0.3
189,248 - Rv0160c 0.21 +1.5
189,364 + Rv0160c 0.29 -0.4
189,364 + Rv0160c 0.29 +0.0
189,364 + Rv0160c 0.29 -0.7
189,364 + Rv0160c 0.29 +0.8
189,364 + Rv0160c 0.29 -0.3
189,364 + Rv0160c 0.29 +0.1
189,364 + Rv0160c 0.29 +1.0
189,365 - Rv0160c 0.29 -0.3
189,365 - Rv0160c 0.29 +0.1
189,365 - Rv0160c 0.29 -0.6
189,365 - Rv0160c 0.29 +4.0
189,365 - Rv0160c 0.29 -0.3
189,365 - Rv0160c 0.29 -0.0
189,368 - Rv0160c 0.29 +2.0
189,384 - Rv0160c 0.30 -0.2
189,386 - Rv0160c 0.30 +0.1
189,445 + Rv0160c 0.34 +0.3
189,460 + Rv0160c 0.35 +0.8
189,460 + Rv0160c 0.35 +1.1
189,461 - Rv0160c 0.35 -0.0
189,547 + Rv0160c 0.41 -0.2
189,547 + Rv0160c 0.41 -0.0
189,570 - Rv0160c 0.42 -0.1
189,617 - Rv0160c 0.45 -0.5
189,617 - Rv0160c 0.45 +3.3
189,686 + Rv0160c 0.50 -1.1
189,731 - Rv0160c 0.53 +0.1
189,731 - Rv0160c 0.53 -0.0

Or see this region's nucleotide sequence