Experiment: 7H9 with Bedaquiline 0.15 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0170 and Rv0171 overlap by 4 nucleotides Rv0171 and Rv0172 overlap by 4 nucleotides
Rv0170: Rv0170 - Mce-family protein Mce1B, at 199,895 to 200,935
Rv0170
Rv0171: Rv0171 - Mce-family protein Mce1C, at 200,932 to 202,479
Rv0171
Rv0172: Rv0172 - Mce-family protein Mce1D, at 202,476 to 204,068
Rv0172
Position (kb) 200
201
202
203 Strain fitness (log2 ratio) -2
-1
0
1
2 at 200.002 kb on + strand, within Rv0170 at 200.097 kb on + strand, within Rv0170 at 200.097 kb on + strand, within Rv0170 at 200.162 kb on + strand, within Rv0170 at 200.162 kb on + strand, within Rv0170 at 200.421 kb on + strand, within Rv0170 at 200.563 kb on + strand, within Rv0170 at 200.702 kb on + strand, within Rv0170 at 200.832 kb on - strand at 201.104 kb on + strand, within Rv0171 at 201.437 kb on - strand, within Rv0171 at 201.437 kb on - strand, within Rv0171 at 201.472 kb on - strand, within Rv0171 at 201.518 kb on + strand, within Rv0171 at 201.521 kb on + strand, within Rv0171 at 201.522 kb on - strand, within Rv0171 at 201.581 kb on + strand, within Rv0171 at 201.594 kb on + strand, within Rv0171 at 201.595 kb on - strand, within Rv0171 at 201.595 kb on - strand, within Rv0171 at 201.839 kb on - strand, within Rv0171 at 201.919 kb on - strand, within Rv0171 at 201.961 kb on + strand, within Rv0171 at 201.961 kb on + strand, within Rv0171 at 201.962 kb on - strand, within Rv0171 at 202.494 kb on - strand at 202.676 kb on + strand, within Rv0172 at 202.677 kb on - strand, within Rv0172 at 202.677 kb on - strand, within Rv0172 at 202.758 kb on + strand, within Rv0172 at 202.758 kb on + strand, within Rv0172 at 202.759 kb on - strand, within Rv0172 at 202.759 kb on - strand, within Rv0172 at 202.759 kb on - strand, within Rv0172 at 202.759 kb on - strand, within Rv0172 at 202.839 kb on + strand, within Rv0172 at 202.839 kb on + strand, within Rv0172 at 202.937 kb on + strand, within Rv0172 at 203.031 kb on - strand, within Rv0172 at 203.114 kb on - strand, within Rv0172 at 203.143 kb on + strand, within Rv0172 at 203.319 kb on - strand, within Rv0172 at 203.424 kb on + strand, within Rv0172 at 203.425 kb on - strand, within Rv0172 at 203.425 kb on - strand, within Rv0172 at 203.425 kb on - strand, within Rv0172
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Bedaquiline 0.15 ug/mL remove 200,002 + Rv0170 0.10 -1.2 200,097 + Rv0170 0.19 -0.4 200,097 + Rv0170 0.19 -0.1 200,162 + Rv0170 0.26 -1.9 200,162 + Rv0170 0.26 -1.2 200,421 + Rv0170 0.51 -0.5 200,563 + Rv0170 0.64 -0.5 200,702 + Rv0170 0.78 -0.6 200,832 - -1.0 201,104 + Rv0171 0.11 -1.6 201,437 - Rv0171 0.33 -1.2 201,437 - Rv0171 0.33 -0.1 201,472 - Rv0171 0.35 -1.7 201,518 + Rv0171 0.38 +0.3 201,521 + Rv0171 0.38 +2.6 201,522 - Rv0171 0.38 -0.9 201,581 + Rv0171 0.42 -0.5 201,594 + Rv0171 0.43 -1.8 201,595 - Rv0171 0.43 -0.7 201,595 - Rv0171 0.43 -1.4 201,839 - Rv0171 0.59 -1.3 201,919 - Rv0171 0.64 -1.3 201,961 + Rv0171 0.66 -1.4 201,961 + Rv0171 0.66 -1.2 201,962 - Rv0171 0.67 -0.6 202,494 - -1.6 202,676 + Rv0172 0.13 +1.1 202,677 - Rv0172 0.13 -1.4 202,677 - Rv0172 0.13 -1.8 202,758 + Rv0172 0.18 -0.3 202,758 + Rv0172 0.18 -1.8 202,759 - Rv0172 0.18 -0.7 202,759 - Rv0172 0.18 +0.5 202,759 - Rv0172 0.18 -1.7 202,759 - Rv0172 0.18 -1.5 202,839 + Rv0172 0.23 -1.4 202,839 + Rv0172 0.23 +1.9 202,937 + Rv0172 0.29 -0.1 203,031 - Rv0172 0.35 +0.1 203,114 - Rv0172 0.40 -1.9 203,143 + Rv0172 0.42 -1.7 203,319 - Rv0172 0.53 +0.3 203,424 + Rv0172 0.60 -0.5 203,425 - Rv0172 0.60 -1.3 203,425 - Rv0172 0.60 -2.3 203,425 - Rv0172 0.60 -0.5
Or see this region's nucleotide sequence