Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0130
Experiment: 7H9 with Bedaquiline 0.15 ug/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 7H9 with Bedaquiline 0.15 ug/mL |
---|---|---|---|---|---|
remove | |||||
156,949 | - | Rv0129c | 0.36 | +0.2 | |
157,035 | + | Rv0129c | 0.45 | -0.9 | |
157,222 | - | Rv0129c | 0.63 | -0.3 | |
157,234 | - | Rv0129c | 0.64 | -0.8 | |
157,288 | - | Rv0129c | 0.69 | -0.1 | |
157,327 | - | Rv0129c | 0.73 | -0.3 | |
157,435 | - | Rv0129c | 0.84 | -0.6 | |
157,435 | - | Rv0129c | 0.84 | -0.1 | |
157,525 | + | -1.1 | |||
157,600 | + | -0.8 | |||
157,601 | - | +0.3 | |||
157,604 | + | -0.5 | |||
157,607 | + | +1.6 | |||
157,818 | - | -1.8 | |||
157,823 | + | -0.2 | |||
157,824 | - | -0.1 | |||
158,079 | - | Rv0130 | 0.51 | +0.4 | |
158,638 | - | Rv0131c | 0.24 | -0.5 | |
158,761 | + | Rv0131c | 0.33 | -0.7 | |
158,840 | + | Rv0131c | 0.39 | -1.1 | |
159,045 | + | Rv0131c | 0.54 | -1.4 | |
159,046 | - | Rv0131c | 0.54 | +0.0 |
Or see this region's nucleotide sequence