Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1876

Experiment: MoLS4 with (C) L-Lactate (20mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntclpB and DVU1875 are separated by 24 nucleotidesDVU1875 and dnaJ are separated by 32 nucleotidesdnaJ and DVU1877 are separated by 142 nucleotides DVU1874: clpB - ATP-dependent Clp protease, ATP-binding subunit ClpB (TIGR), at 1,940,871 to 1,943,468 clpB DVU1875: DVU1875 - dafA protein (TIGR), at 1,943,493 to 1,943,810 DVU1875 DVU1876: dnaJ - dnaJ protein, putative (TIGR), at 1,943,843 to 1,944,793 dnaJ DVU1877: DVU1877 - polysaccharide deacetylase family protein (TIGR), at 1,944,936 to 1,946,036 DVU1877 Position (kb) 1943 1944 1945Strain fitness (log2 ratio) -2 -1 0 1at 1942.857 kb on - strand, within clpBat 1942.857 kb on - strand, within clpBat 1942.965 kb on + strand, within clpBat 1943.039 kb on - strand, within clpBat 1943.059 kb on - strand, within clpBat 1943.102 kb on - strand, within clpBat 1943.187 kb on - strand, within clpBat 1943.431 kb on - strandat 1943.600 kb on - strand, within DVU1875at 1943.643 kb on - strand, within DVU1875at 1943.796 kb on + strandat 1943.809 kb on + strandat 1943.834 kb on + strandat 1943.879 kb on + strandat 1943.887 kb on - strandat 1943.888 kb on + strandat 1943.974 kb on + strand, within dnaJat 1943.974 kb on + strand, within dnaJat 1943.974 kb on + strand, within dnaJat 1943.974 kb on + strand, within dnaJat 1943.982 kb on - strand, within dnaJat 1943.982 kb on - strand, within dnaJat 1944.060 kb on + strand, within dnaJat 1944.060 kb on + strand, within dnaJat 1944.067 kb on + strand, within dnaJat 1944.122 kb on + strand, within dnaJat 1944.172 kb on + strand, within dnaJat 1944.421 kb on - strand, within dnaJat 1944.505 kb on - strand, within dnaJat 1944.612 kb on + strand, within dnaJat 1944.805 kb on - strandat 1944.874 kb on + strandat 1944.931 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with (C) L-Lactate (20mM)
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1,942,857 - clpB DVU1874 0.76 -0.5
1,942,857 - clpB DVU1874 0.76 +0.9
1,942,965 + clpB DVU1874 0.81 -0.3
1,943,039 - clpB DVU1874 0.83 -0.3
1,943,059 - clpB DVU1874 0.84 -0.0
1,943,102 - clpB DVU1874 0.86 -1.4
1,943,187 - clpB DVU1874 0.89 -0.5
1,943,431 - -0.7
1,943,600 - DVU1875 0.34 +1.0
1,943,643 - DVU1875 0.47 -0.0
1,943,796 + +0.5
1,943,809 + +0.0
1,943,834 + +0.1
1,943,879 + +0.0
1,943,887 - +0.1
1,943,888 + +0.7
1,943,974 + dnaJ DVU1876 0.14 +0.1
1,943,974 + dnaJ DVU1876 0.14 -1.1
1,943,974 + dnaJ DVU1876 0.14 -0.3
1,943,974 + dnaJ DVU1876 0.14 -0.5
1,943,982 - dnaJ DVU1876 0.15 -0.6
1,943,982 - dnaJ DVU1876 0.15 +0.5
1,944,060 + dnaJ DVU1876 0.23 -0.4
1,944,060 + dnaJ DVU1876 0.23 -0.9
1,944,067 + dnaJ DVU1876 0.24 -0.3
1,944,122 + dnaJ DVU1876 0.29 -0.2
1,944,172 + dnaJ DVU1876 0.35 -1.0
1,944,421 - dnaJ DVU1876 0.61 -0.0
1,944,505 - dnaJ DVU1876 0.70 -2.0
1,944,612 + dnaJ DVU1876 0.81 +0.0
1,944,805 - -0.3
1,944,874 + -1.1
1,944,931 + -0.5

Or see this region's nucleotide sequence