Experiment: MoLS4 with (C) L-Lactate (20mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt clpB and DVU1875 are separated by 24 nucleotides DVU1875 and dnaJ are separated by 32 nucleotides dnaJ and DVU1877 are separated by 142 nucleotides
DVU1874: clpB - ATP-dependent Clp protease, ATP-binding subunit ClpB (TIGR), at 1,940,871 to 1,943,468
clpB
DVU1875: DVU1875 - dafA protein (TIGR), at 1,943,493 to 1,943,810
DVU1875
DVU1876: dnaJ - dnaJ protein, putative (TIGR), at 1,943,843 to 1,944,793
dnaJ
DVU1877: DVU1877 - polysaccharide deacetylase family protein (TIGR), at 1,944,936 to 1,946,036
DVU1877
Position (kb)
1943
1944
1945 Strain fitness (log2 ratio)
-2
-1
0
1 at 1942.857 kb on - strand, within clpB at 1942.857 kb on - strand, within clpB at 1942.965 kb on + strand, within clpB at 1943.039 kb on - strand, within clpB at 1943.059 kb on - strand, within clpB at 1943.102 kb on - strand, within clpB at 1943.187 kb on - strand, within clpB at 1943.431 kb on - strand at 1943.600 kb on - strand, within DVU1875 at 1943.643 kb on - strand, within DVU1875 at 1943.796 kb on + strand at 1943.809 kb on + strand at 1943.834 kb on + strand at 1943.879 kb on + strand at 1943.887 kb on - strand at 1943.888 kb on + strand at 1943.974 kb on + strand, within dnaJ at 1943.974 kb on + strand, within dnaJ at 1943.974 kb on + strand, within dnaJ at 1943.974 kb on + strand, within dnaJ at 1943.982 kb on - strand, within dnaJ at 1943.982 kb on - strand, within dnaJ at 1944.060 kb on + strand, within dnaJ at 1944.060 kb on + strand, within dnaJ at 1944.067 kb on + strand, within dnaJ at 1944.122 kb on + strand, within dnaJ at 1944.172 kb on + strand, within dnaJ at 1944.421 kb on - strand, within dnaJ at 1944.505 kb on - strand, within dnaJ at 1944.612 kb on + strand, within dnaJ at 1944.805 kb on - strand at 1944.874 kb on + strand at 1944.931 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with (C) L-Lactate (20mM) remove 1,942,857 - clpB DVU1874 0.76 -0.5 1,942,857 - clpB DVU1874 0.76 +0.9 1,942,965 + clpB DVU1874 0.81 -0.3 1,943,039 - clpB DVU1874 0.83 -0.3 1,943,059 - clpB DVU1874 0.84 -0.0 1,943,102 - clpB DVU1874 0.86 -1.4 1,943,187 - clpB DVU1874 0.89 -0.5 1,943,431 - -0.7 1,943,600 - DVU1875 0.34 +1.0 1,943,643 - DVU1875 0.47 -0.0 1,943,796 + +0.5 1,943,809 + +0.0 1,943,834 + +0.1 1,943,879 + +0.0 1,943,887 - +0.1 1,943,888 + +0.7 1,943,974 + dnaJ DVU1876 0.14 +0.1 1,943,974 + dnaJ DVU1876 0.14 -1.1 1,943,974 + dnaJ DVU1876 0.14 -0.3 1,943,974 + dnaJ DVU1876 0.14 -0.5 1,943,982 - dnaJ DVU1876 0.15 -0.6 1,943,982 - dnaJ DVU1876 0.15 +0.5 1,944,060 + dnaJ DVU1876 0.23 -0.4 1,944,060 + dnaJ DVU1876 0.23 -0.9 1,944,067 + dnaJ DVU1876 0.24 -0.3 1,944,122 + dnaJ DVU1876 0.29 -0.2 1,944,172 + dnaJ DVU1876 0.35 -1.0 1,944,421 - dnaJ DVU1876 0.61 -0.0 1,944,505 - dnaJ DVU1876 0.70 -2.0 1,944,612 + dnaJ DVU1876 0.81 +0.0 1,944,805 - -0.3 1,944,874 + -1.1 1,944,931 + -0.5
Or see this region's nucleotide sequence