Experiment: 7H9 with Bedaquiline 0.15 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0824c and Rv0825c are separated by 161 nucleotides Rv0825c and Rv0826 are separated by 80 nucleotides
Rv0824c: Rv0824c - Probable acyl-[acyl-carrier protein] desaturase DesA1 (acyl-[ACP] desaturase) (stearoyl-ACP desaturase) (protein Des), at 917,734 to 918,750
Rv0824c
Rv0825c: Rv0825c - Conserved protein, at 918,912 to 919,553
Rv0825c
Rv0826: Rv0826 - Conserved hypothetical protein, at 919,634 to 920,689
Rv0826
Position (kb) 918
919
920 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 918.792 kb on - strand at 918.792 kb on - strand at 918.973 kb on + strand at 918.973 kb on + strand at 918.974 kb on - strand at 918.974 kb on - strand at 919.055 kb on - strand, within Rv0825c at 919.074 kb on - strand, within Rv0825c at 919.204 kb on - strand, within Rv0825c at 919.204 kb on - strand, within Rv0825c at 919.492 kb on - strand at 919.563 kb on - strand at 919.586 kb on + strand at 919.645 kb on + strand at 919.646 kb on - strand at 919.646 kb on - strand at 919.654 kb on + strand at 919.717 kb on + strand at 919.718 kb on - strand at 919.718 kb on - strand at 919.719 kb on + strand at 919.719 kb on + strand at 919.720 kb on - strand at 919.720 kb on - strand at 919.766 kb on + strand, within Rv0826 at 919.815 kb on - strand, within Rv0826 at 919.870 kb on + strand, within Rv0826 at 919.870 kb on + strand, within Rv0826 at 919.870 kb on + strand, within Rv0826 at 919.952 kb on + strand, within Rv0826 at 919.953 kb on - strand, within Rv0826 at 919.953 kb on - strand, within Rv0826 at 920.018 kb on + strand, within Rv0826 at 920.018 kb on + strand, within Rv0826 at 920.019 kb on - strand, within Rv0826 at 920.060 kb on + strand, within Rv0826 at 920.088 kb on - strand, within Rv0826 at 920.088 kb on - strand, within Rv0826 at 920.176 kb on - strand, within Rv0826 at 920.198 kb on + strand, within Rv0826 at 920.207 kb on + strand, within Rv0826 at 920.208 kb on - strand, within Rv0826 at 920.259 kb on - strand, within Rv0826 at 920.429 kb on + strand, within Rv0826 at 920.430 kb on - strand, within Rv0826
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Bedaquiline 0.15 ug/mL remove 918,792 - -0.3 918,792 - -0.5 918,973 + -0.7 918,973 + -0.2 918,974 - -0.2 918,974 - +1.3 919,055 - Rv0825c 0.22 -1.0 919,074 - Rv0825c 0.25 -1.3 919,204 - Rv0825c 0.45 -0.7 919,204 - Rv0825c 0.45 +0.3 919,492 - +0.0 919,563 - -0.0 919,586 + +1.0 919,645 + -0.3 919,646 - +0.1 919,646 - -0.5 919,654 + +1.9 919,717 + -0.9 919,718 - +0.4 919,718 - -0.4 919,719 + -0.2 919,719 + -0.4 919,720 - -1.0 919,720 - +0.2 919,766 + Rv0826 0.12 +0.2 919,815 - Rv0826 0.17 -0.3 919,870 + Rv0826 0.22 +0.2 919,870 + Rv0826 0.22 -0.1 919,870 + Rv0826 0.22 -0.0 919,952 + Rv0826 0.30 -0.6 919,953 - Rv0826 0.30 +3.7 919,953 - Rv0826 0.30 -1.6 920,018 + Rv0826 0.36 +0.5 920,018 + Rv0826 0.36 +0.9 920,019 - Rv0826 0.36 -0.7 920,060 + Rv0826 0.40 -0.8 920,088 - Rv0826 0.43 -0.5 920,088 - Rv0826 0.43 -2.6 920,176 - Rv0826 0.51 +0.2 920,198 + Rv0826 0.53 -0.1 920,207 + Rv0826 0.54 -0.5 920,208 - Rv0826 0.54 -0.8 920,259 - Rv0826 0.59 -0.7 920,429 + Rv0826 0.75 -0.4 920,430 - Rv0826 0.75 +0.6
Or see this region's nucleotide sequence