Experiment: 7H9 with Rifampicin 0.014 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv3712 and Rv3713 are separated by 4 nucleotides Rv3713 and Rv3714c are separated by 8 nucleotides Rv3714c and Rv3715c are separated by 67 nucleotides Rv3715c and Rv3716c are separated by 11 nucleotides
Rv3712: Rv3712 - Possible ligase, at 4,156,981 to 4,158,222
Rv3712
Rv3713: Rv3713 - Possible cobyric acid synthase CobQ2, at 4,158,227 to 4,158,922
Rv3713
Rv3714c: Rv3714c - Conserved hypothetical protein, at 4,158,931 to 4,159,821
Rv3714c
Rv3715c: Rv3715c - Probable recombination protein RecR, at 4,159,889 to 4,160,500
Rv3715c
Rv3716c: Rv3716c - Conserved protein, at 4,160,512 to 4,160,913
Rv3716c
Position (kb) 4158
4159
4160 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4158.920 kb on + strand at 4159.121 kb on + strand, within Rv3714c at 4159.122 kb on - strand, within Rv3714c at 4159.122 kb on - strand, within Rv3714c at 4159.122 kb on - strand, within Rv3714c at 4159.122 kb on - strand, within Rv3714c at 4159.324 kb on + strand, within Rv3714c at 4159.324 kb on + strand, within Rv3714c at 4159.325 kb on - strand, within Rv3714c at 4159.418 kb on + strand, within Rv3714c at 4159.496 kb on - strand, within Rv3714c at 4159.594 kb on - strand, within Rv3714c at 4159.600 kb on + strand, within Rv3714c at 4159.601 kb on - strand, within Rv3714c at 4159.679 kb on + strand, within Rv3714c at 4159.679 kb on + strand, within Rv3714c at 4159.680 kb on - strand, within Rv3714c at 4159.680 kb on - strand, within Rv3714c at 4159.680 kb on - strand, within Rv3714c at 4159.680 kb on - strand, within Rv3714c at 4160.029 kb on - strand, within Rv3715c at 4160.193 kb on + strand, within Rv3715c at 4160.399 kb on + strand, within Rv3715c at 4160.572 kb on - strand, within Rv3716c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Rifampicin 0.014 ug/mL remove 4,158,920 + +1.3 4,159,121 + Rv3714c 0.21 +0.3 4,159,122 - Rv3714c 0.21 -0.7 4,159,122 - Rv3714c 0.21 -1.0 4,159,122 - Rv3714c 0.21 -1.1 4,159,122 - Rv3714c 0.21 -0.4 4,159,324 + Rv3714c 0.44 +0.3 4,159,324 + Rv3714c 0.44 -1.8 4,159,325 - Rv3714c 0.44 -1.1 4,159,418 + Rv3714c 0.55 -1.0 4,159,496 - Rv3714c 0.63 +0.1 4,159,594 - Rv3714c 0.74 -0.2 4,159,600 + Rv3714c 0.75 -0.6 4,159,601 - Rv3714c 0.75 +0.1 4,159,679 + Rv3714c 0.84 +0.5 4,159,679 + Rv3714c 0.84 -1.1 4,159,680 - Rv3714c 0.84 +1.8 4,159,680 - Rv3714c 0.84 -0.2 4,159,680 - Rv3714c 0.84 -0.4 4,159,680 - Rv3714c 0.84 +0.6 4,160,029 - Rv3715c 0.23 -1.5 4,160,193 + Rv3715c 0.50 -0.2 4,160,399 + Rv3715c 0.83 +1.4 4,160,572 - Rv3716c 0.15 +0.8
Or see this region's nucleotide sequence