Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3574

Experiment: 7H9 with Rifampicin 0.014 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Rifampicin 0.014 ug/mL
4,015,695	-		Rv3573c	0.76	-0.1
4,016,101	-				+0.5
4,016,242	+				-1.4
4,016,243	-				-1.9
4,016,243	-				-1.1
4,016,282	-				+0.0
4,016,315	+				+0.2
4,016,316	-				+0.4
4,016,316	-				-0.7
4,016,316	-				+0.4
4,016,362	+				-0.9
4,016,362	+				+1.8
4,016,363	-				+0.3
4,016,418	+				-0.2
4,016,447	+				-0.9
4,016,492	-				+0.2
4,016,644	-		Rv3574	0.27	+2.0
4,016,835	+		Rv3574	0.58	+1.2
4,017,082	-				-0.3
4,017,179	+				-0.2
4,017,295	-		Rv3575c	0.19	-0.3
4,017,316	-		Rv3575c	0.21	+0.1
4,017,430	-		Rv3575c	0.32	-0.5
4,017,489	-		Rv3575c	0.37	-0.4
4,017,513	-		Rv3575c	0.39	+0.3
4,017,513	-		Rv3575c	0.39	+0.4
4,017,624	+		Rv3575c	0.50	-0.4
4,017,744	+		Rv3575c	0.61	-0.1
4,017,769	-		Rv3575c	0.63	-0.7
4,017,931	-		Rv3575c	0.78	-0.5
4,018,014	+		Rv3575c	0.86	+1.3
4,018,052	+		Rv3575c	0.89	-0.7