Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3330

Experiment: 7H9 with Rifampicin 0.014 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Rifampicin 0.014 ug/mL
3,715,079	+		Rv3329	0.52	-0.0
3,715,160	+		Rv3329	0.58	+1.1
3,715,415	+		Rv3329	0.78	-0.3
3,715,539	+		Rv3329	0.87	-0.7
3,715,568	+		Rv3329	0.89	-0.3
3,715,568	+		Rv3329	0.89	+0.4
3,715,568	+		Rv3329	0.89	-0.2
3,715,569	-		Rv3329	0.89	-1.3
3,715,844	+				-1.0
3,715,892	-				-0.7
3,715,968	-		Rv3330	0.16	-1.0
3,716,263	+		Rv3330	0.40	-1.9
3,716,263	+		Rv3330	0.40	-1.0
3,716,264	-		Rv3330	0.40	-0.6
3,716,264	-		Rv3330	0.40	-0.4
3,716,264	-		Rv3330	0.40	-0.9
3,716,264	-		Rv3330	0.40	-0.6
3,716,264	-		Rv3330	0.40	-0.7
3,716,458	+		Rv3330	0.56	-0.8
3,716,458	+		Rv3330	0.56	-0.3
3,716,594	-		Rv3330	0.67	-1.1
3,716,594	-		Rv3330	0.67	-0.3
3,716,600	-		Rv3330	0.68	+1.8
3,716,630	-		Rv3330	0.70	-2.3
3,716,631	+		Rv3330	0.70	+0.1
3,716,632	-		Rv3330	0.70	-1.0
3,716,632	-		Rv3330	0.70	-0.7
3,716,759	-		Rv3330	0.81	-1.1
3,716,992	+				-0.0
3,716,993	-				-1.1
3,716,993	-				+0.7
3,717,000	+				+0.2
3,717,288	+		Rv3331	0.13	-1.0
3,717,582	+		Rv3331	0.33	+1.3
3,717,582	+		Rv3331	0.33	+0.5
3,717,583	-		Rv3331	0.33	+1.4
3,717,681	+		Rv3331	0.39	+0.5