Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3004

Experiment: 7H9 with Rifampicin 0.014 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Rifampicin 0.014 ug/mL
3,363,091	-				-0.7
3,363,118	-				-1.9
3,363,118	-				-1.4
3,363,153	-				-0.8
3,363,166	-				-0.1
3,363,398	-		Rv3004	0.15	-0.3
3,363,427	+		Rv3004	0.23	-0.1
3,363,766	-				+1.7
3,363,780	-		Rv3005c	0.10	-1.6
3,363,780	-		Rv3005c	0.10	-1.9
3,363,878	-		Rv3005c	0.22	-0.2
3,363,878	-		Rv3005c	0.22	-3.9
3,363,901	+		Rv3005c	0.25	-2.2
3,363,901	+		Rv3005c	0.25	-2.7
3,363,901	+		Rv3005c	0.25	+0.1
3,364,045	+		Rv3005c	0.42	-2.6
3,364,045	+		Rv3005c	0.42	-2.1
3,364,045	+		Rv3005c	0.42	-1.4
3,364,046	-		Rv3005c	0.42	-3.2
3,364,046	-		Rv3005c	0.42	-2.9
3,364,069	+		Rv3005c	0.45	-2.4
3,364,070	-		Rv3005c	0.45	-4.2
3,364,183	-		Rv3005c	0.58	-2.0
3,364,300	+		Rv3005c	0.72	-1.2
3,364,300	+		Rv3005c	0.72	-2.9
3,364,301	-		Rv3005c	0.72	-2.5
3,364,301	-		Rv3005c	0.72	-3.4
3,364,333	+		Rv3005c	0.76	-2.1
3,364,358	+		Rv3005c	0.79	-3.1
3,364,359	-		Rv3005c	0.79	-2.0
3,364,369	+		Rv3005c	0.80	-4.0
3,364,369	+		Rv3005c	0.80	-3.1
3,364,369	+		Rv3005c	0.80	+0.1
3,364,369	+		Rv3005c	0.80	-3.1
3,364,370	-		Rv3005c	0.81	-2.6
3,364,380	-		Rv3005c	0.82	-3.1
3,364,414	+		Rv3005c	0.86	-2.0
3,364,414	+		Rv3005c	0.86	-0.9
3,364,415	-		Rv3005c	0.86	-1.8
3,364,415	-		Rv3005c	0.86	-3.6