Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2804c

Experiment: 7H9 with Rifampicin 0.014 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Rifampicin 0.014 ug/mL
3,111,567	+		Rv2802c	0.75	+0.2
3,111,656	+		Rv2802c	0.84	+1.3
3,111,656	+		Rv2802c	0.84	+0.1
3,111,656	+		Rv2802c	0.84	-2.6
3,111,656	+		Rv2802c	0.84	-0.1
3,111,657	-		Rv2802c	0.84	+0.1
3,111,873	+		Rv2803	0.11	-0.3
3,111,874	-		Rv2803	0.11	-1.0
3,111,996	+		Rv2803	0.37	-1.2
3,111,996	+		Rv2803	0.37	+1.6
3,111,997	-		Rv2803	0.37	-1.0
3,111,997	-		Rv2803	0.37	-0.4
3,111,997	-		Rv2803	0.37	-0.4
3,111,997	-		Rv2803	0.37	-0.6
3,112,002	+		Rv2803	0.38	-0.7
3,112,002	+		Rv2803	0.38	-0.3
3,112,007	+		Rv2803	0.40	-0.3
3,112,007	+		Rv2803	0.40	+0.6
3,112,007	+		Rv2803	0.40	-0.7
3,112,008	-		Rv2803	0.40	-0.8
3,112,008	-		Rv2803	0.40	-0.9
3,112,008	-		Rv2803	0.40	-1.0
3,112,008	-		Rv2803	0.40	-1.2
3,112,008	-		Rv2803	0.40	-0.6
3,112,011	+		Rv2803	0.40	-1.9
3,112,011	+		Rv2803	0.40	-0.2
3,112,012	-		Rv2803	0.41	-0.2
3,112,012	-		Rv2803	0.41	+0.6
3,112,466	+				-0.5
3,112,658	-		Rv2804c	0.31	-0.2
3,112,658	-		Rv2804c	0.31	-0.3
3,112,712	-		Rv2804c	0.39	-0.3
3,112,712	-		Rv2804c	0.39	-0.6
3,112,791	-		Rv2804c	0.52	-2.8
3,112,791	-		Rv2804c	0.52	-0.9
3,112,993	-				-0.6
3,113,077	+				-0.7
3,113,302	-		Rv2806	0.18	+0.1
3,113,341	+		Rv2806	0.38	-0.6
3,113,341	+		Rv2806	0.38	-0.2
3,113,382	-		Rv2806	0.59	+0.5
3,113,409	+		Rv2806	0.73	-2.8
3,113,410	-		Rv2806	0.74	-0.1
3,113,444	+				+0.7
3,113,445	-				+0.4
3,113,589	+				-0.1
3,113,589	+				+0.3
3,113,589	+				-0.2
3,113,589	+				-0.5
3,113,607	-				-0.1
3,113,795	-		Rv2807	0.12	-0.8