Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1838c

Experiment: 7H9 with Rifampicin 0.014 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Rifampicin 0.014 ug/mL
2,086,994	+				+0.7
2,087,014	-				-2.5
2,087,032	+				+0.4
2,087,032	+				-0.0
2,087,032	+				+0.3
2,087,033	-				-0.5
2,087,033	-				-0.6
2,087,035	+				+0.1
2,087,035	+				+0.4
2,087,036	-				+0.4
2,087,139	+				-0.5
2,087,162	+				-0.9
2,087,163	-				-2.3
2,087,163	-				-0.8
2,087,283	-				-0.9
2,087,350	+		Rv1838c	0.23	+0.1
2,087,350	+		Rv1838c	0.23	+0.1
2,087,350	+		Rv1838c	0.23	-1.1
2,087,350	+		Rv1838c	0.23	-1.0
2,087,350	+		Rv1838c	0.23	-0.4
2,087,351	-		Rv1838c	0.24	+0.0
2,087,351	-		Rv1838c	0.24	+0.4
2,087,351	-		Rv1838c	0.24	-0.7
2,087,351	-		Rv1838c	0.24	-0.8
2,087,351	-		Rv1838c	0.24	-1.1
2,087,351	-		Rv1838c	0.24	-0.3
2,087,451	+		Rv1838c	0.49	-0.4
2,087,501	+		Rv1838c	0.62	+0.8
2,087,501	+		Rv1838c	0.62	+0.1
2,087,501	+		Rv1838c	0.62	+0.1
2,087,512	+		Rv1838c	0.64	-0.4
2,087,512	+		Rv1838c	0.64	-1.1
2,087,512	+		Rv1838c	0.64	-0.2
2,087,513	-		Rv1838c	0.65	-0.8
2,087,513	-		Rv1838c	0.65	-0.8
2,087,513	-		Rv1838c	0.65	-0.3
2,087,513	-		Rv1838c	0.65	-0.2
2,087,543	-		Rv1838c	0.72	+1.7
2,087,595	+		Rv1838c	0.85	-0.8
2,087,621	+				-0.0
2,087,622	-				+1.2
2,087,622	-				-0.3
2,087,622	-				-0.1
2,087,622	-				-0.0
2,087,622	-				+0.1
2,087,769	+		Rv1839c	0.45	-1.1
2,087,770	-		Rv1839c	0.46	-1.3
2,087,770	-		Rv1839c	0.46	+0.0
2,087,770	-		Rv1839c	0.46	-0.1
2,087,913	-				+0.4
2,087,926	-				+0.1
2,087,934	+				-0.5
2,087,935	-				-0.3
2,087,935	-				+0.0
2,087,973	-				+0.6