Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1696

Experiment: 7H9 with Rifampicin 0.014 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Rifampicin 0.014 ug/mL
1,919,813	+				+1.7
1,919,813	+				-1.8
1,919,887	-		Rv1696	0.12	-0.1
1,920,038	+		Rv1696	0.20	-1.0
1,920,179	-		Rv1696	0.28	-0.4
1,920,332	-		Rv1696	0.37	-0.6
1,920,388	-		Rv1696	0.40	-0.5
1,920,571	+		Rv1696	0.50	-0.8
1,920,655	+		Rv1696	0.55	-1.0
1,920,655	+		Rv1696	0.55	+0.0
1,921,413	-				-1.5
1,921,444	+				-0.0
1,921,445	-				-0.4
1,921,473	-				-2.8
1,921,475	-				-0.6