Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1213

Experiment: 7H9 with Rifampicin 0.014 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Rifampicin 0.014 ug/mL
1,354,936	+		Rv1212c	0.38	-0.6
1,354,972	+		Rv1212c	0.41	-0.3
1,354,973	-		Rv1212c	0.41	+3.7
1,354,973	-		Rv1212c	0.41	-2.0
1,354,973	-		Rv1212c	0.41	-0.0
1,354,973	-		Rv1212c	0.41	-0.4
1,354,979	-		Rv1212c	0.41	-0.4
1,355,009	-		Rv1212c	0.44	+0.1
1,355,107	-		Rv1212c	0.52	+0.1
1,355,363	+		Rv1212c	0.74	+0.7
1,355,364	-		Rv1212c	0.74	-0.4
1,355,364	-		Rv1212c	0.74	-0.0
1,355,399	+		Rv1212c	0.77	+0.7
1,355,400	-		Rv1212c	0.77	-0.1
1,355,400	-		Rv1212c	0.77	-0.2
1,355,576	-				-0.4
1,355,580	-				+0.7
1,355,603	-				-0.5
1,355,603	-				+0.4
1,355,618	+				+0.5
1,355,618	+				-0.2
1,355,619	-				+0.0
1,355,662	-				+0.2
1,356,020	-		Rv1213	0.15	-0.7
1,356,020	-		Rv1213	0.15	-1.7
1,356,020	-		Rv1213	0.15	-0.6
1,356,086	-		Rv1213	0.21	-0.9
1,356,155	-		Rv1213	0.26	-1.6
1,356,194	-		Rv1213	0.29	+2.3
1,356,194	-		Rv1213	0.29	-0.7
1,356,294	-		Rv1213	0.38	-0.3
1,356,330	+		Rv1213	0.41	+1.5
1,356,330	+		Rv1213	0.41	-1.8
1,356,437	-		Rv1213	0.49	-0.8
1,356,559	+		Rv1213	0.60	+0.3
1,356,610	+		Rv1213	0.64	-0.3
1,356,654	+		Rv1213	0.67	-0.5
1,356,654	+		Rv1213	0.67	-1.1
1,356,654	+		Rv1213	0.67	-0.7
1,356,655	-		Rv1213	0.67	-1.2
1,356,691	+		Rv1213	0.70	+0.3
1,356,691	+		Rv1213	0.70	-1.1
1,356,692	-		Rv1213	0.70	-1.5
1,357,049	-				-1.9
1,357,423	-		Rv1214c	0.39	+0.0
1,357,423	-		Rv1214c	0.39	-0.6
1,357,458	-		Rv1214c	0.50	-0.9
1,357,469	-		Rv1214c	0.53	+0.0
1,357,469	-		Rv1214c	0.53	+0.1
1,357,645	-				-1.1
1,357,913	-				-0.2