Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1006

Experiment: 7H9 with Rifampicin 0.014 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Rifampicin 0.014 ug/mL
1,123,577	+				-0.5
1,123,577	+				+0.2
1,123,591	-				-2.4
1,123,721	+				-0.6
1,123,722	-				-1.2
1,123,868	+				-1.7
1,124,054	-		Rv1006	0.20	-0.6
1,124,125	+		Rv1006	0.24	+1.3
1,124,131	+		Rv1006	0.24	-0.2
1,124,222	-		Rv1006	0.30	-2.9
1,124,290	+		Rv1006	0.34	-3.2
1,124,335	+		Rv1006	0.36	-1.5
1,124,336	-		Rv1006	0.37	+0.3
1,124,408	-		Rv1006	0.41	-1.1
1,124,470	+		Rv1006	0.44	-2.6
1,124,474	-		Rv1006	0.45	-1.9
1,124,523	-		Rv1006	0.47	-0.9
1,124,523	-		Rv1006	0.47	+1.7
1,124,821	+		Rv1006	0.65	-1.9
1,124,821	+		Rv1006	0.65	-0.7
1,124,851	+		Rv1006	0.67	-2.1
1,124,852	-		Rv1006	0.67	-2.9
1,124,943	+		Rv1006	0.72	-3.3
1,124,965	+		Rv1006	0.73	-0.4
1,125,041	-		Rv1006	0.78	-2.0
1,125,247	+				+1.4
1,125,247	+				-1.4
1,125,310	+				-1.3
1,125,311	-				-1.4
1,125,358	+				-1.8
1,125,415	+				-0.1
1,125,415	+				-0.9
1,125,416	-				+0.5
1,125,416	-				-0.3