Experiment: 7H9 with Rifampicin 0.014 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0846c and Rv0847 are separated by 148 nucleotides Rv0847 and Rv0848 are separated by 202 nucleotides Rv0848 and Rv0849 overlap by 1 nucleotides
Rv0846c: Rv0846c - Probable oxidase, at 942,680 to 944,194
Rv0846c
Rv0847: Rv0847 - Probable lipoprotein LpqS, at 944,343 to 944,735
Rv0847
Rv0848: Rv0848 - Possible cysteine synthase a CysK2 (O-acetylserine sulfhydrylase) (O-acetylserine (thiol)-lyase) (CSASE), at 944,938 to 946,056
Rv0848
Rv0849: Rv0849 - Probable conserved integral membrane transport protein, at 946,056 to 947,315
Rv0849
Position (kb) 944
945
946
947 Strain fitness (log2 ratio) -1
0
1 at 944.232 kb on - strand at 944.313 kb on + strand at 944.314 kb on - strand at 944.473 kb on + strand, within Rv0847 at 944.473 kb on + strand, within Rv0847 at 944.473 kb on + strand, within Rv0847 at 944.587 kb on + strand, within Rv0847 at 944.590 kb on + strand, within Rv0847 at 944.591 kb on - strand, within Rv0847 at 944.591 kb on - strand, within Rv0847 at 944.841 kb on + strand at 944.841 kb on + strand at 944.906 kb on + strand at 944.907 kb on - strand at 945.104 kb on + strand, within Rv0848 at 945.126 kb on + strand, within Rv0848 at 945.249 kb on + strand, within Rv0848 at 945.682 kb on - strand, within Rv0848 at 945.685 kb on + strand, within Rv0848 at 945.782 kb on - strand, within Rv0848 at 945.910 kb on + strand, within Rv0848 at 945.910 kb on + strand, within Rv0848 at 945.911 kb on - strand, within Rv0848 at 945.923 kb on - strand, within Rv0848 at 945.923 kb on - strand, within Rv0848 at 946.072 kb on + strand at 946.073 kb on - strand at 946.140 kb on + strand at 946.141 kb on - strand at 946.172 kb on - strand at 946.428 kb on + strand, within Rv0849 at 946.488 kb on + strand, within Rv0849 at 946.528 kb on + strand, within Rv0849 at 946.725 kb on + strand, within Rv0849 at 946.746 kb on + strand, within Rv0849 at 946.794 kb on + strand, within Rv0849 at 946.795 kb on - strand, within Rv0849
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Rifampicin 0.014 ug/mL remove 944,232 - -0.3 944,313 + -0.2 944,314 - -0.3 944,473 + Rv0847 0.33 -0.5 944,473 + Rv0847 0.33 -0.3 944,473 + Rv0847 0.33 +0.2 944,587 + Rv0847 0.62 -0.1 944,590 + Rv0847 0.63 +0.1 944,591 - Rv0847 0.63 -0.8 944,591 - Rv0847 0.63 +0.2 944,841 + -0.2 944,841 + -0.9 944,906 + -0.9 944,907 - +1.4 945,104 + Rv0848 0.15 +0.5 945,126 + Rv0848 0.17 +0.4 945,249 + Rv0848 0.28 -0.7 945,682 - Rv0848 0.66 +1.7 945,685 + Rv0848 0.67 +1.3 945,782 - Rv0848 0.75 -0.0 945,910 + Rv0848 0.87 -0.2 945,910 + Rv0848 0.87 +1.2 945,911 - Rv0848 0.87 -0.2 945,923 - Rv0848 0.88 +0.0 945,923 - Rv0848 0.88 +0.0 946,072 + +0.2 946,073 - -1.3 946,140 + -0.5 946,141 - -0.1 946,172 - +0.8 946,428 + Rv0849 0.30 +0.9 946,488 + Rv0849 0.34 +0.3 946,528 + Rv0849 0.37 +0.5 946,725 + Rv0849 0.53 -0.5 946,746 + Rv0849 0.55 -0.6 946,794 + Rv0849 0.59 -0.4 946,795 - Rv0849 0.59 +0.2
Or see this region's nucleotide sequence