Experiment: 7H9 with Rifampicin 0.014 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0817c and Rv0818 are separated by 129 nucleotides Rv0818 and Rv0819 overlap by 4 nucleotides Rv0819 and Rv0820 are separated by 42 nucleotides Rv0820 and Rv0821c are separated by 55 nucleotides
Rv0817c: Rv0817c - Probable conserved exported protein, at 910,030 to 910,842
Rv0817c
Rv0818: Rv0818 - Transcriptional regulatory protein, at 910,972 to 911,739
Rv0818
Rv0819: Rv0819 - GCN5-related N-acetyltransferase, MshD, at 911,736 to 912,683
Rv0819
Rv0820: Rv0820 - Probable phosphate-transport ATP-binding protein ABC transporter PhoT, at 912,726 to 913,502
Rv0820
Rv0821c: Rv0821c - Probable phosphate-transport system transcriptional regulatory protein PhoY2, at 913,558 to 914,199
Rv0821c
Position (kb) 911
912
913 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 910.895 kb on + strand at 910.901 kb on + strand at 910.982 kb on + strand at 910.982 kb on + strand at 910.982 kb on + strand at 910.982 kb on + strand at 910.983 kb on - strand at 910.983 kb on - strand at 910.983 kb on - strand at 910.985 kb on + strand at 910.985 kb on + strand at 910.985 kb on + strand at 910.985 kb on + strand at 910.985 kb on + strand at 910.985 kb on + strand at 910.986 kb on - strand at 911.189 kb on + strand, within Rv0818 at 911.386 kb on + strand, within Rv0818 at 911.387 kb on - strand, within Rv0818 at 911.425 kb on + strand, within Rv0818 at 911.425 kb on + strand, within Rv0818 at 911.425 kb on + strand, within Rv0818 at 911.426 kb on - strand, within Rv0818 at 911.426 kb on - strand, within Rv0818 at 911.426 kb on - strand, within Rv0818 at 911.449 kb on + strand, within Rv0818 at 911.450 kb on - strand, within Rv0818 at 911.512 kb on + strand, within Rv0818 at 911.513 kb on - strand, within Rv0818 at 911.620 kb on + strand, within Rv0818 at 911.620 kb on + strand, within Rv0818 at 911.700 kb on + strand at 911.700 kb on + strand at 911.700 kb on + strand at 911.700 kb on + strand at 912.161 kb on + strand, within Rv0819 at 912.205 kb on - strand, within Rv0819 at 912.442 kb on - strand, within Rv0819 at 912.442 kb on - strand, within Rv0819 at 912.579 kb on + strand, within Rv0819 at 912.580 kb on - strand, within Rv0819 at 912.580 kb on - strand, within Rv0819 at 912.640 kb on - strand at 912.678 kb on - strand at 912.723 kb on + strand at 912.723 kb on + strand at 912.724 kb on - strand at 912.763 kb on - strand at 912.765 kb on + strand at 912.766 kb on - strand at 912.942 kb on - strand, within Rv0820 at 912.942 kb on - strand, within Rv0820 at 912.945 kb on + strand, within Rv0820 at 912.945 kb on + strand, within Rv0820 at 912.945 kb on + strand, within Rv0820 at 913.317 kb on + strand, within Rv0820 at 913.317 kb on + strand, within Rv0820 at 913.318 kb on - strand, within Rv0820 at 913.340 kb on + strand, within Rv0820 at 913.341 kb on - strand, within Rv0820 at 913.420 kb on + strand, within Rv0820 at 913.421 kb on - strand, within Rv0820 at 913.500 kb on + strand at 913.631 kb on + strand, within Rv0821c at 913.632 kb on - strand, within Rv0821c at 913.632 kb on - strand, within Rv0821c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Rifampicin 0.014 ug/mL remove 910,895 + -0.3 910,901 + -1.2 910,982 + -0.2 910,982 + +0.9 910,982 + +0.1 910,982 + -0.1 910,983 - -1.4 910,983 - -1.1 910,983 - -1.8 910,985 + +1.7 910,985 + +0.1 910,985 + -0.5 910,985 + +0.7 910,985 + -0.6 910,985 + -0.9 910,986 - -0.6 911,189 + Rv0818 0.28 -0.2 911,386 + Rv0818 0.54 -0.6 911,387 - Rv0818 0.54 -1.9 911,425 + Rv0818 0.59 -1.0 911,425 + Rv0818 0.59 +0.6 911,425 + Rv0818 0.59 +0.1 911,426 - Rv0818 0.59 -2.5 911,426 - Rv0818 0.59 -2.1 911,426 - Rv0818 0.59 -2.4 911,449 + Rv0818 0.62 +2.7 911,450 - Rv0818 0.62 -1.7 911,512 + Rv0818 0.70 -0.7 911,513 - Rv0818 0.70 -2.6 911,620 + Rv0818 0.84 -0.2 911,620 + Rv0818 0.84 -0.2 911,700 + +0.1 911,700 + -0.1 911,700 + +0.0 911,700 + -0.3 912,161 + Rv0819 0.45 +1.7 912,205 - Rv0819 0.49 -2.6 912,442 - Rv0819 0.74 +0.1 912,442 - Rv0819 0.74 -2.5 912,579 + Rv0819 0.89 -0.9 912,580 - Rv0819 0.89 -0.3 912,580 - Rv0819 0.89 -2.7 912,640 - -2.6 912,678 - -2.1 912,723 + +1.0 912,723 + -0.6 912,724 - -0.6 912,763 - -0.9 912,765 + -3.4 912,766 - -0.7 912,942 - Rv0820 0.28 -2.0 912,942 - Rv0820 0.28 -2.3 912,945 + Rv0820 0.28 -4.5 912,945 + Rv0820 0.28 +0.9 912,945 + Rv0820 0.28 -1.0 913,317 + Rv0820 0.76 -3.4 913,317 + Rv0820 0.76 -1.7 913,318 - Rv0820 0.76 -0.3 913,340 + Rv0820 0.79 -3.5 913,341 - Rv0820 0.79 -2.4 913,420 + Rv0820 0.89 -4.0 913,421 - Rv0820 0.89 -2.9 913,500 + +0.3 913,631 + Rv0821c 0.11 -0.0 913,632 - Rv0821c 0.12 +0.1 913,632 - Rv0821c 0.12 +0.1
Or see this region's nucleotide sequence