Experiment: 7H9 with Rifampicin 0.014 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0785 and Rv0786c are separated by 34 nucleotides Rv0786c and Rv0787 overlap by 6 nucleotides Rv0787 and Rv0787A are separated by 105 nucleotides Rv0787A and Rv0788 overlap by 4 nucleotides
Rv0785: Rv0785 - Conserved protein, at 879,340 to 881,040
Rv0785
Rv0786c: Rv0786c - Conserved protein, at 881,075 to 881,464
Rv0786c
Rv0787: Rv0787 - Unknown protein, at 881,459 to 882,418
Rv0787
Rv0787A: Rv0787A - Conserved protein, at 882,524 to 882,763
Rv0787A
Rv0788: Rv0788 - Probable phosphoribosylformylglycinamidine synthase I PURG (FGAM synthase I), at 882,760 to 883,434
Rv0788
Position (kb) 881
882
883 Strain fitness (log2 ratio) -2
-1
0
1 at 880.683 kb on + strand, within Rv0785 at 880.684 kb on - strand, within Rv0785 at 880.732 kb on + strand, within Rv0785 at 881.064 kb on + strand at 881.065 kb on - strand at 881.145 kb on + strand, within Rv0786c at 881.148 kb on + strand, within Rv0786c at 881.358 kb on + strand, within Rv0786c at 881.638 kb on + strand, within Rv0787 at 881.812 kb on + strand, within Rv0787 at 881.866 kb on + strand, within Rv0787 at 882.257 kb on + strand, within Rv0787 at 882.258 kb on - strand, within Rv0787 at 882.263 kb on + strand, within Rv0787 at 882.264 kb on - strand, within Rv0787 at 882.344 kb on - strand at 882.398 kb on + strand at 882.399 kb on - strand at 882.443 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Rifampicin 0.014 ug/mL remove 880,683 + Rv0785 0.79 -0.3 880,684 - Rv0785 0.79 -0.6 880,732 + Rv0785 0.82 +0.5 881,064 + -0.3 881,065 - -0.9 881,145 + Rv0786c 0.18 -0.3 881,148 + Rv0786c 0.19 +0.2 881,358 + Rv0786c 0.73 -0.1 881,638 + Rv0787 0.19 +0.3 881,812 + Rv0787 0.37 -0.7 881,866 + Rv0787 0.42 -1.6 882,257 + Rv0787 0.83 +0.7 882,258 - Rv0787 0.83 -0.8 882,263 + Rv0787 0.84 -1.0 882,264 - Rv0787 0.84 -0.5 882,344 - -0.3 882,398 + -0.2 882,399 - -0.7 882,443 - -2.7
Or see this region's nucleotide sequence