Experiment: 7H9 with Rifampicin 0.014 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0238 and Rv0239 are separated by 61 nucleotides Rv0239 and Rv0240 are separated by 7 nucleotides Rv0240 and Rv0241c are separated by 29 nucleotides Rv0241c and Rv0242c are separated by 10 nucleotides
Rv0238: Rv0238 - Possible transcriptional regulatory protein (probably TetR-family), at 288,428 to 289,042
Rv0238
Rv0239: Rv0239 - Possible antitoxin VapB24, at 289,104 to 289,337
Rv0239
Rv0240: Rv0240 - Possible toxin VapC24. Contains PIN domain., at 289,345 to 289,782
Rv0240
Rv0241c: Rv0241c - Probable 3-hydroxyacyl-thioester dehydratase HtdX, at 289,812 to 290,654
Rv0241c
Rv0242c: Rv0242c - Probable 3-oxoacyl-[acyl-carrier protein] reductase FabG4 (3-ketoacyl-acyl carrier protein reductase), at 290,665 to 292,029
Rv0242c
Position (kb) 289
290
291 Strain fitness (log2 ratio) -2
-1
0
1 at 289.075 kb on + strand at 289.227 kb on + strand, within Rv0239 at 289.365 kb on + strand at 289.376 kb on - strand at 289.473 kb on + strand, within Rv0240 at 289.474 kb on - strand, within Rv0240 at 289.484 kb on - strand, within Rv0240 at 289.503 kb on + strand, within Rv0240 at 289.504 kb on - strand, within Rv0240 at 289.636 kb on - strand, within Rv0240 at 289.656 kb on - strand, within Rv0240 at 289.814 kb on - strand at 289.860 kb on - strand at 289.904 kb on - strand, within Rv0241c at 289.904 kb on - strand, within Rv0241c at 289.985 kb on + strand, within Rv0241c at 290.389 kb on - strand, within Rv0241c at 290.951 kb on + strand, within Rv0242c at 291.467 kb on + strand, within Rv0242c at 291.546 kb on - strand, within Rv0242c at 291.546 kb on - strand, within Rv0242c at 291.546 kb on - strand, within Rv0242c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Rifampicin 0.014 ug/mL remove 289,075 + -0.0 289,227 + Rv0239 0.53 -1.3 289,365 + -0.2 289,376 - -0.5 289,473 + Rv0240 0.29 -1.4 289,474 - Rv0240 0.29 -0.1 289,484 - Rv0240 0.32 -0.2 289,503 + Rv0240 0.36 +0.8 289,504 - Rv0240 0.36 -0.1 289,636 - Rv0240 0.66 -0.2 289,656 - Rv0240 0.71 -0.3 289,814 - -0.0 289,860 - -0.0 289,904 - Rv0241c 0.11 -0.4 289,904 - Rv0241c 0.11 -1.6 289,985 + Rv0241c 0.21 -2.7 290,389 - Rv0241c 0.68 -2.0 290,951 + Rv0242c 0.21 -1.5 291,467 + Rv0242c 0.59 -0.1 291,546 - Rv0242c 0.65 -0.9 291,546 - Rv0242c 0.65 +0.5 291,546 - Rv0242c 0.65 -1.5
Or see this region's nucleotide sequence