Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3820c

Experiment: 7H9 with Rifampicin 0.014 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Rifampicin 0.014 ug/mL
4,283,736	+		Rv3818	0.83	-0.7
4,284,024	+				-0.8
4,284,155	-		Rv3819	0.47	-0.1
4,284,390	+				-0.6
4,284,433	+				-0.6
4,284,433	+				+0.0
4,284,434	-				+0.1
4,284,468	+				-1.7
4,284,737	+		Rv3820c	0.23	+0.1
4,284,892	+		Rv3820c	0.34	+1.1
4,284,892	+		Rv3820c	0.34	-0.1
4,284,892	+		Rv3820c	0.34	+0.1
4,284,892	+		Rv3820c	0.34	+0.2
4,284,893	-		Rv3820c	0.34	+0.4
4,284,893	-		Rv3820c	0.34	+0.5
4,284,898	+		Rv3820c	0.34	+1.0
4,284,899	-		Rv3820c	0.34	-0.3
4,284,912	-		Rv3820c	0.35	+0.6
4,284,982	+		Rv3820c	0.40	+0.5
4,284,983	-		Rv3820c	0.40	+0.6
4,285,055	-		Rv3820c	0.45	+1.7
4,285,082	+		Rv3820c	0.47	+0.4
4,285,083	-		Rv3820c	0.47	+0.3
4,285,194	+		Rv3820c	0.55	+0.1
4,285,194	+		Rv3820c	0.55	+0.2
4,285,272	+		Rv3820c	0.61	+0.3
4,285,273	-		Rv3820c	0.61	+0.5
4,285,273	-		Rv3820c	0.61	-0.0
4,285,279	+		Rv3820c	0.61	+0.7
4,285,280	-		Rv3820c	0.61	+1.8
4,285,280	-		Rv3820c	0.61	-0.2
4,285,345	-		Rv3820c	0.66	-0.5
4,285,345	-		Rv3820c	0.66	+0.8
4,285,498	+		Rv3820c	0.77	-0.2
4,285,499	-		Rv3820c	0.77	-0.2
4,285,546	-		Rv3820c	0.80	+0.3
4,285,546	-		Rv3820c	0.80	+0.8
4,285,582	-		Rv3820c	0.83	+0.4
4,285,645	+		Rv3820c	0.87	+2.8
4,285,661	+		Rv3820c	0.88	+2.4
4,285,661	+		Rv3820c	0.88	+1.8
4,285,662	-		Rv3820c	0.88	+0.8
4,285,674	+		Rv3820c	0.89	-0.1
4,285,702	-				-0.4
4,285,722	-				+0.8
4,285,722	-				-0.1
4,285,722	-				+0.4
4,285,774	+				+0.2
4,285,774	+				+0.1
4,285,775	-				-0.2
4,285,813	+				-0.8
4,285,813	+				-0.6
4,285,814	-				+0.0
4,285,814	-				+0.2
4,285,819	+				+0.3
4,285,819	+				+0.6
4,285,820	-				+0.1
4,285,820	-				+0.4
4,285,820	-				+0.6
4,285,870	+				+0.6
4,285,875	+				-0.1
4,285,875	+				-0.0
4,285,911	+				+0.4
4,285,911	+				+0.4
4,286,099	+		Rv3821	0.18	-1.4
4,286,185	-		Rv3821	0.30	+0.5
4,286,216	-		Rv3821	0.34	-0.7
4,286,244	+		Rv3821	0.38	+0.2
4,286,245	-		Rv3821	0.38	-0.7
4,286,245	-		Rv3821	0.38	+0.0
4,286,245	-		Rv3821	0.38	-0.7
4,286,304	+		Rv3821	0.46	+0.7
4,286,336	-		Rv3821	0.51	+0.3
4,286,336	-		Rv3821	0.51	+1.4
4,286,381	+		Rv3821	0.57	+0.8
4,286,403	+		Rv3821	0.60	-0.5
4,286,404	-		Rv3821	0.60	+0.2
4,286,429	+		Rv3821	0.64	-0.1
4,286,429	+		Rv3821	0.64	-0.7
4,286,430	-		Rv3821	0.64	-0.2
4,286,497	+		Rv3821	0.73	+0.0
4,286,497	+		Rv3821	0.73	-0.7
4,286,546	+		Rv3821	0.80	+0.8
4,286,563	+		Rv3821	0.83	-0.5
4,286,563	+		Rv3821	0.83	-0.0
4,286,563	+		Rv3821	0.83	-0.8
4,286,759	-				-1.0