Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3225c

Experiment: 7H9 with Rifampicin 0.014 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Rifampicin 0.014 ug/mL
3,600,123	+		Rv3224	0.32	-1.0
3,600,124	-		Rv3224	0.32	+0.1
3,600,124	-		Rv3224	0.32	-0.6
3,600,124	-		Rv3224	0.32	-0.2
3,600,155	+		Rv3224	0.36	-0.7
3,600,155	+		Rv3224	0.36	-0.6
3,600,156	-		Rv3224	0.36	-0.2
3,600,223	+		Rv3224	0.44	+0.5
3,600,223	+		Rv3224	0.44	+1.1
3,600,224	-		Rv3224	0.44	-0.3
3,600,224	-		Rv3224	0.44	-0.2
3,600,224	-		Rv3224	0.44	-0.6
3,600,224	-		Rv3224	0.44	+1.3
3,600,230	+		Rv3224	0.45	+0.9
3,600,231	-		Rv3224	0.45	-0.7
3,600,252	+		Rv3224	0.47	+0.7
3,600,252	+		Rv3224	0.47	+1.7
3,600,253	-		Rv3224	0.47	-0.3
3,600,253	-		Rv3224	0.47	-0.1
3,600,334	+		Rv3224	0.57	-0.5
3,600,334	+		Rv3224	0.57	-0.1
3,600,335	-		Rv3224	0.57	-1.9
3,600,335	-		Rv3224	0.57	-0.6
3,600,335	-		Rv3224	0.57	+1.4
3,600,335	-		Rv3224	0.57	+1.0
3,600,349	+		Rv3224	0.59	-0.1
3,600,349	+		Rv3224	0.59	+0.2
3,600,349	+		Rv3224	0.59	-0.5
3,600,507	-		Rv3224	0.77	-2.0
3,600,507	-		Rv3224	0.77	-0.6
3,600,508	+		Rv3224	0.77	+0.1
3,600,508	+		Rv3224	0.77	-1.3
3,600,508	+		Rv3224	0.77	+0.2
3,600,509	-		Rv3224	0.78	-0.5
3,600,523	+		Rv3224	0.79	-0.2
3,600,523	+		Rv3224	0.79	-0.0
3,600,523	+		Rv3224	0.79	-0.8
3,600,524	-		Rv3224	0.79	+0.1
3,600,554	-		Rv3224	0.83	-1.4
3,600,619	+				-0.2
3,600,822	-				-0.3
3,601,030	+				-0.3
3,601,111	-				+0.2
3,601,114	-				+0.3
3,601,379	+		Rv3225c	0.25	+1.3
3,601,451	+		Rv3225c	0.31	+0.4
3,601,685	+		Rv3225c	0.47	-0.2
3,601,710	+		Rv3225c	0.49	+0.3
3,601,789	-		Rv3225c	0.54	+0.1
3,601,832	+		Rv3225c	0.57	-0.3
3,601,832	+		Rv3225c	0.57	+0.6
3,601,922	+		Rv3225c	0.64	-0.0
3,601,936	-		Rv3225c	0.65	+0.3
3,602,074	-		Rv3225c	0.74	-0.1
3,602,074	-		Rv3225c	0.74	+0.3
3,602,204	+		Rv3225c	0.83	-0.2
3,602,205	-		Rv3225c	0.83	+3.1
3,602,283	+		Rv3225c	0.89	-0.1
3,602,284	-		Rv3225c	0.89	+0.9
3,602,315	-				-0.2
3,602,334	-				-0.5
3,602,847	+		Rv3226c	0.37	+0.8
3,602,847	+		Rv3226c	0.37	-0.2
3,602,848	-		Rv3226c	0.37	-3.8
3,602,848	-		Rv3226c	0.37	+0.1
3,603,043	+		Rv3226c	0.63	-0.3
3,603,223	-		Rv3226c	0.87	+1.2
3,603,223	-		Rv3226c	0.87	+2.8
3,603,330	-				+0.3
3,603,330	-				-0.1
3,603,330	-				-0.2