Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3070

Experiment: 7H9 with Rifampicin 0.014 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Rifampicin 0.014 ug/mL
3,433,150	+		Rv3068c	0.71	-1.4
3,433,150	+		Rv3068c	0.71	-1.7
3,433,235	-		Rv3068c	0.76	+0.8
3,433,235	-		Rv3068c	0.76	+0.2
3,433,274	-		Rv3068c	0.79	+0.1
3,433,321	-		Rv3068c	0.82	-0.6
3,433,321	-		Rv3068c	0.82	+1.8
3,433,412	-		Rv3068c	0.87	-0.3
3,433,412	-		Rv3068c	0.87	+0.2
3,433,442	+		Rv3068c	0.89	-0.9
3,433,442	+		Rv3068c	0.89	+0.3
3,433,443	-		Rv3068c	0.89	+0.2
3,433,443	-		Rv3068c	0.89	-1.0
3,433,446	+		Rv3068c	0.89	-0.4
3,433,447	-		Rv3068c	0.89	+2.3
3,433,546	+				-0.4
3,433,547	-				+0.3
3,433,668	+				+0.4
3,433,669	-				+0.7
3,433,669	-				-0.5
3,433,669	-				-0.8
3,433,852	-		Rv3069	0.40	-0.0
3,433,894	-		Rv3069	0.51	+1.8
3,434,081	-				-1.8
3,434,295	+		Rv3070	0.55	+0.9
3,434,350	-		Rv3070	0.69	-0.1
3,434,350	-		Rv3070	0.69	-0.0
3,434,350	-		Rv3070	0.69	-1.0
3,434,401	+		Rv3070	0.82	+1.1
3,434,896	+		Rv3071	0.39	+0.3
3,434,896	+		Rv3071	0.39	-0.5
3,434,896	+		Rv3071	0.39	-0.3
3,434,897	-		Rv3071	0.39	-1.6
3,435,345	+		Rv3071	0.79	-1.9
3,435,365	+		Rv3071	0.81	-0.2
3,435,381	+		Rv3071	0.83	+0.1
3,435,381	+		Rv3071	0.83	-1.3