Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3056

Experiment: 7H9 with Rifampicin 0.014 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Rifampicin 0.014 ug/mL
3,415,980	+				-0.3
3,415,980	+				+1.1
3,415,993	+				-0.6
3,415,993	+				+1.2
3,415,993	+				+0.8
3,415,993	+				-0.4
3,415,994	-				+0.0
3,415,994	-				+1.2
3,415,994	-				-1.6
3,415,994	-				-0.6
3,415,994	-				+0.1
3,415,994	-				-0.9
3,415,994	-				+0.5
3,416,070	-				+0.6
3,416,526	+		Rv3055	0.72	-2.1
3,416,603	+		Rv3055	0.85	+0.1
3,416,603	+		Rv3055	0.85	+0.0
3,416,604	-		Rv3055	0.85	+2.1
3,416,604	-		Rv3055	0.85	+0.0
3,416,704	+				-0.2
3,416,864	+		Rv3056	0.15	+0.7
3,416,864	+		Rv3056	0.15	-0.1
3,416,865	-		Rv3056	0.15	+0.1
3,416,963	+		Rv3056	0.25	+0.2
3,417,044	+		Rv3056	0.33	+0.5
3,417,044	+		Rv3056	0.33	+2.1
3,417,044	+		Rv3056	0.33	-0.1
3,417,045	-		Rv3056	0.33	-0.2
3,417,045	-		Rv3056	0.33	+0.0
3,417,045	-		Rv3056	0.33	-1.9
3,417,141	+		Rv3056	0.42	-0.1
3,417,141	+		Rv3056	0.42	-1.4
3,417,145	+		Rv3056	0.42	+0.2
3,417,145	+		Rv3056	0.42	-0.2
3,417,145	+		Rv3056	0.42	-0.5
3,417,146	-		Rv3056	0.42	+0.2
3,417,146	-		Rv3056	0.42	-0.5
3,417,146	-		Rv3056	0.42	-0.3
3,417,146	-		Rv3056	0.42	+0.7
3,417,146	-		Rv3056	0.42	+0.7
3,417,146	-		Rv3056	0.42	+0.5
3,417,206	+		Rv3056	0.48	-0.2
3,417,206	+		Rv3056	0.48	-0.4
3,417,206	+		Rv3056	0.48	+0.7
3,417,207	-		Rv3056	0.48	+0.1
3,417,250	+		Rv3056	0.52	+0.1
3,417,323	+		Rv3056	0.59	+0.1
3,417,324	-		Rv3056	0.59	-0.2
3,417,605	+		Rv3056	0.86	+0.3
3,417,605	+		Rv3056	0.86	-0.2
3,417,605	+		Rv3056	0.86	+0.5
3,417,690	+				-0.2
3,417,690	+				-0.3
3,417,691	-				-1.0
3,417,691	-				+1.7
3,417,744	-				-0.2
3,417,744	-				+0.9
3,417,860	+				-0.5
3,417,860	+				-0.5
3,417,861	-				-0.5
3,417,891	-		Rv3057c	0.11	+3.5
3,417,891	-		Rv3057c	0.11	-0.6
3,417,915	+		Rv3057c	0.13	+0.0
3,417,915	+		Rv3057c	0.13	-2.1
3,417,915	+		Rv3057c	0.13	+0.2
3,417,915	+		Rv3057c	0.13	-0.8
3,417,915	+		Rv3057c	0.13	+1.4
3,417,915	+		Rv3057c	0.13	-1.2
3,417,916	-		Rv3057c	0.14	+0.3
3,417,916	-		Rv3057c	0.14	-1.6
3,417,916	-		Rv3057c	0.14	-0.3
3,417,918	-		Rv3057c	0.14	-0.1
3,417,926	+		Rv3057c	0.15	+0.1
3,417,926	+		Rv3057c	0.15	-0.9
3,417,927	-		Rv3057c	0.15	-0.2
3,417,927	-		Rv3057c	0.15	-1.3
3,417,927	-		Rv3057c	0.15	-1.6
3,417,927	-		Rv3057c	0.15	-0.7
3,417,927	-		Rv3057c	0.15	-0.2
3,418,056	+		Rv3057c	0.30	+0.1
3,418,056	+		Rv3057c	0.30	-0.8
3,418,173	+		Rv3057c	0.43	-0.5
3,418,174	-		Rv3057c	0.43	+0.0
3,418,175	+		Rv3057c	0.44	+0.0
3,418,175	+		Rv3057c	0.44	-0.4
3,418,378	+		Rv3057c	0.67	+0.2
3,418,378	-		Rv3057c	0.67	+0.0
3,418,382	-		Rv3057c	0.67	-1.7
3,418,382	-		Rv3057c	0.67	-1.0
3,418,442	+		Rv3057c	0.74	-1.5
3,418,545	-		Rv3057c	0.86	-0.5
3,418,545	-		Rv3057c	0.86	-0.8
3,418,637	+				+0.7
3,418,638	-				-0.3
3,418,702	-				-0.9
3,418,727	+				-0.3
3,418,727	+				+0.3
3,418,727	+				+0.1
3,418,727	+				+0.1
3,418,728	-				-1.1
3,418,728	-				-1.8
3,418,728	-				-0.4
3,418,728	-				+1.5
3,418,728	-				-0.6
3,418,728	-				-1.2