Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1754c

Experiment: 7H9 with Rifampicin 0.014 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Rifampicin 0.014 ug/mL
1,984,007	+		Rv1753c	0.76	+0.2
1,984,008	-		Rv1753c	0.76	+0.0
1,984,143	+		Rv1753c	0.80	+1.0
1,984,186	-		Rv1753c	0.81	+0.6
1,984,315	+		Rv1753c	0.85	-0.2
1,984,316	-		Rv1753c	0.85	+0.9
1,984,357	+		Rv1753c	0.87	+0.7
1,984,357	+		Rv1753c	0.87	-0.3
1,984,358	-		Rv1753c	0.87	+0.3
1,984,495	-				-0.0
1,984,761	+				-0.3
1,984,875	+				+2.3
1,984,879	+				-1.0
1,984,880	-				+0.3
1,984,880	-				-0.3
1,984,905	+				+0.4
1,985,013	+				+1.7
1,985,014	-				-0.1
1,985,014	-				+1.7
1,985,035	+				+0.7
1,985,035	+				+0.5
1,985,082	+				+0.2
1,985,179	+		Rv1754c	0.12	+0.7
1,985,179	+		Rv1754c	0.12	+0.3
1,985,180	-		Rv1754c	0.12	+0.4
1,985,180	-		Rv1754c	0.12	+0.2
1,985,203	-		Rv1754c	0.13	-0.2
1,985,214	+		Rv1754c	0.14	-0.6
1,985,214	+		Rv1754c	0.14	+0.5
1,985,223	+		Rv1754c	0.14	+1.5
1,985,223	+		Rv1754c	0.14	+0.2
1,985,224	-		Rv1754c	0.14	+1.4
1,985,224	-		Rv1754c	0.14	+0.4
1,985,317	-		Rv1754c	0.20	+0.6
1,985,367	+		Rv1754c	0.23	+0.3
1,985,367	+		Rv1754c	0.23	+0.4
1,985,367	+		Rv1754c	0.23	+0.4
1,985,368	-		Rv1754c	0.23	+0.2
1,985,406	+		Rv1754c	0.25	-0.5
1,985,407	-		Rv1754c	0.25	-0.4
1,985,413	-		Rv1754c	0.26	+0.7
1,985,413	-		Rv1754c	0.26	+1.7
1,985,568	+		Rv1754c	0.35	+0.6
1,985,569	-		Rv1754c	0.35	+0.5
1,985,730	-		Rv1754c	0.44	+0.6
1,985,746	-		Rv1754c	0.45	+1.7
1,985,824	-		Rv1754c	0.50	+1.0
1,986,083	+		Rv1754c	0.65	-0.8
1,986,083	+		Rv1754c	0.65	+0.1
1,986,084	-		Rv1754c	0.65	-0.0
1,986,180	-		Rv1754c	0.71	+1.0
1,986,196	+		Rv1754c	0.72	+0.7
1,986,197	-		Rv1754c	0.72	+0.7
1,986,308	+		Rv1754c	0.79	+1.6
1,986,420	-		Rv1754c	0.85	+1.5
1,986,550	-				-0.8
1,986,588	+				+0.1
1,986,588	+				+0.8
1,986,589	-				+0.5
1,986,589	-				+0.2
1,986,592	+				+1.3
1,986,593	-				+0.4
1,986,661	-				-0.0
1,986,666	+				-0.4
1,986,666	+				-0.6
1,986,667	-				+0.2
1,986,818	+				+2.0