Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1642

Experiment: 7H9 with Rifampicin 0.014 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Rifampicin 0.014 ug/mL
1,851,958	-				+0.3
1,851,979	-				+1.3
1,852,876	+				-0.1
1,853,173	+				-0.5
1,853,173	+				+0.1
1,853,662	-				-0.2
1,853,662	-				-0.7
1,853,662	-				-0.6
1,853,745	+		Rv1644	0.18	+0.5
1,853,745	+		Rv1644	0.18	+0.2
1,853,746	-		Rv1644	0.18	+0.2
1,853,848	+		Rv1644	0.31	-0.3
1,853,849	-		Rv1644	0.31	+0.5
1,853,910	+		Rv1644	0.39	+0.0
1,853,910	+		Rv1644	0.39	+0.4
1,853,910	+		Rv1644	0.39	+1.7
1,853,910	+		Rv1644	0.39	-0.3
1,853,911	-		Rv1644	0.39	+0.1
1,853,980	-		Rv1644	0.48	-0.0
1,854,044	+		Rv1644	0.56	-0.7
1,854,044	+		Rv1644	0.56	+0.6
1,854,044	+		Rv1644	0.56	+1.0
1,854,044	+		Rv1644	0.56	+1.1
1,854,045	-		Rv1644	0.56	+0.3
1,854,045	-		Rv1644	0.56	+0.0