Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1398c

Experiment: 7H9 with Rifampicin 0.014 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Rifampicin 0.014 ug/mL
1,573,598	+		Rv1396c	0.85	+0.5
1,573,599	-		Rv1396c	0.85	-0.7
1,573,673	+		Rv1396c	0.89	-0.1
1,573,673	+		Rv1396c	0.89	+0.1
1,573,674	-		Rv1396c	0.89	-0.9
1,573,674	-		Rv1396c	0.89	+1.2
1,573,674	-		Rv1396c	0.89	+0.4
1,573,674	-		Rv1396c	0.89	+0.3
1,573,913	-				+0.4
1,573,949	+				-1.1
1,574,082	+				-1.6
1,574,082	+				-0.6
1,574,082	+				-0.2
1,574,082	+				-0.7
1,574,082	+				-0.5
1,574,083	-				-0.5
1,574,229	+		Rv1397c	0.29	-0.5
1,574,230	-		Rv1397c	0.29	-2.1
1,574,230	-		Rv1397c	0.29	+1.7
1,574,308	-		Rv1397c	0.49	-1.1
1,574,308	-		Rv1397c	0.49	-0.3
1,574,611	+		Rv1398c	0.39	+0.9
1,574,612	-		Rv1398c	0.40	-0.3
1,574,749	-				-1.0
1,574,767	+				-0.1
1,574,768	-				-1.1
1,574,775	-				-0.3
1,574,779	+				+1.7
1,574,780	-				+0.1
1,574,851	+				-1.4
1,574,935	+				-0.6
1,574,964	+		Rv1399c	0.12	+0.0
1,575,004	+		Rv1399c	0.16	-0.3
1,575,142	+		Rv1399c	0.30	+0.3
1,575,142	+		Rv1399c	0.30	-0.4
1,575,142	+		Rv1399c	0.30	+0.4
1,575,142	+		Rv1399c	0.30	-0.1
1,575,142	+		Rv1399c	0.30	-0.4
1,575,143	-		Rv1399c	0.31	-0.2
1,575,550	+		Rv1399c	0.73	-0.0
1,575,595	+		Rv1399c	0.78	+0.0
1,575,654	+		Rv1399c	0.84	+0.5
1,575,749	+				-1.6