Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1155

Experiment: 7H9 with Rifampicin 0.014 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Rifampicin 0.014 ug/mL
1,280,615	-		Rv1153c	0.73	+1.0
1,280,716	-		Rv1153c	0.85	+0.2
1,280,834	+				+0.8
1,280,835	-				-0.8
1,280,835	-				-0.2
1,280,898	+				-0.7
1,280,954	+		Rv1154c	0.17	-0.3
1,280,954	+		Rv1154c	0.17	+0.1
1,280,964	+		Rv1154c	0.19	-0.1
1,280,964	+		Rv1154c	0.19	-0.4
1,280,964	+		Rv1154c	0.19	-0.0
1,281,075	+		Rv1154c	0.36	+0.8
1,281,076	-		Rv1154c	0.36	+0.4
1,281,076	-		Rv1154c	0.36	-0.0
1,281,076	-		Rv1154c	0.36	+0.2
1,281,085	-		Rv1154c	0.38	-0.0
1,281,085	-		Rv1154c	0.38	+0.0
1,281,112	-		Rv1154c	0.42	+0.5
1,281,112	-		Rv1154c	0.42	-0.2
1,281,112	-		Rv1154c	0.42	-0.5
1,281,147	+		Rv1154c	0.47	-0.8
1,281,148	-		Rv1154c	0.48	-1.8
1,281,373	+		Rv1154c	0.83	-0.1
1,281,417	+		Rv1154c	0.89	-0.1
1,281,417	+		Rv1154c	0.89	+0.2
1,281,417	+		Rv1154c	0.89	+0.4
1,281,417	+		Rv1154c	0.89	-0.5
1,281,417	+		Rv1154c	0.89	+2.0
1,281,418	-		Rv1154c	0.90	-0.2
1,281,418	-		Rv1154c	0.90	+0.3
1,281,418	-		Rv1154c	0.90	-0.2
1,281,466	+				+0.3
1,281,503	+		Rv1155	0.17	+0.1
1,281,504	-		Rv1155	0.17	-0.3
1,281,504	-		Rv1155	0.17	-0.1
1,281,504	-		Rv1155	0.17	+1.6
1,281,541	-		Rv1155	0.25	+0.7
1,281,541	-		Rv1155	0.25	+0.4
1,281,568	+		Rv1155	0.31	+0.3
1,281,664	-		Rv1155	0.53	+0.1
1,281,786	+		Rv1155	0.80	-0.7
1,281,844	+				-0.1
1,281,844	+				-0.4
1,281,846	+				+0.3
1,282,019	-				+0.4
1,282,140	+				-0.4
1,282,141	-				-0.1
1,282,141	-				-1.6
1,282,141	-				+0.3
1,282,141	-				+0.4
1,282,294	+				+0.1
1,282,294	+				+0.0
1,282,294	+				+0.3
1,282,295	-				-0.2
1,282,295	-				-0.4
1,282,295	-				+0.7
1,282,527	+		Rv1156	0.38	-0.1
1,282,528	-		Rv1156	0.38	+0.1
1,282,530	-		Rv1156	0.38	-0.7
1,282,786	+		Rv1156	0.82	-1.0
1,282,786	+		Rv1156	0.82	-0.2
1,282,787	-		Rv1156	0.82	-1.5
1,282,787	-		Rv1156	0.82	-0.1
1,282,787	-		Rv1156	0.82	+0.5
1,282,787	-		Rv1156	0.82	-0.4
1,282,787	-		Rv1156	0.82	+1.2
1,282,787	-		Rv1156	0.82	+1.8
1,282,791	-		Rv1156	0.82	-0.5
1,282,791	-		Rv1156	0.82	-0.4