Experiment: 7H9 with Rifampicin 0.014 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0470c and Rv0470A are separated by 142 nucleotides Rv0470A and Rv0471c overlap by 70 nucleotides Rv0471c and Rv0472c are separated by 9 nucleotides Rv0472c and Rv0473 are separated by 136 nucleotides
Rv0470c: Rv0470c - Mycolic acid synthase PcaA (cyclopropane synthase), at 560,848 to 561,711
Rv0470c
Rv0470A: Rv0470A - Hypothetical protein, at 561,854 to 562,294
Rv0470A
Rv0471c: Rv0471c - Hypothetical protein, at 562,225 to 562,713
Rv0471c
Rv0472c: Rv0472c - Probable transcriptional regulatory protein (possibly TetR-family), at 562,723 to 563,427
Rv0472c
Rv0473: Rv0473 - Possible conserved transmembrane protein, at 563,564 to 564,934
Rv0473
Position (kb) 562
563 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 561.272 kb on + strand, within Rv0470c at 561.615 kb on - strand, within Rv0470c at 561.798 kb on + strand at 561.798 kb on + strand at 561.799 kb on - strand at 561.952 kb on + strand, within Rv0470A at 561.953 kb on - strand, within Rv0470A at 561.953 kb on - strand, within Rv0470A at 562.091 kb on + strand, within Rv0470A at 562.099 kb on + strand, within Rv0470A at 562.100 kb on - strand, within Rv0470A at 562.100 kb on - strand, within Rv0470A at 562.100 kb on - strand, within Rv0470A at 562.103 kb on + strand, within Rv0470A at 562.103 kb on + strand, within Rv0470A at 562.103 kb on + strand, within Rv0470A at 562.103 kb on + strand, within Rv0470A at 562.104 kb on - strand, within Rv0470A at 562.104 kb on - strand, within Rv0470A at 562.104 kb on - strand, within Rv0470A at 562.104 kb on - strand, within Rv0470A at 562.107 kb on + strand, within Rv0470A at 562.160 kb on + strand, within Rv0470A at 562.197 kb on + strand, within Rv0470A at 562.219 kb on + strand, within Rv0470A at 562.219 kb on + strand, within Rv0470A at 562.302 kb on + strand, within Rv0471c at 562.303 kb on - strand, within Rv0471c at 562.303 kb on - strand, within Rv0471c at 562.303 kb on - strand, within Rv0471c at 562.303 kb on - strand, within Rv0471c at 562.305 kb on + strand, within Rv0471c at 562.305 kb on + strand, within Rv0471c at 562.305 kb on + strand, within Rv0471c at 562.306 kb on - strand, within Rv0471c at 562.306 kb on - strand, within Rv0471c at 562.306 kb on - strand, within Rv0471c at 562.306 kb on - strand, within Rv0471c at 562.359 kb on + strand, within Rv0471c at 562.359 kb on + strand, within Rv0471c at 562.359 kb on + strand, within Rv0471c at 562.360 kb on - strand, within Rv0471c at 562.360 kb on - strand, within Rv0471c at 562.360 kb on - strand, within Rv0471c at 562.360 kb on - strand, within Rv0471c at 562.360 kb on - strand, within Rv0471c at 562.360 kb on - strand, within Rv0471c at 562.361 kb on + strand, within Rv0471c at 562.361 kb on + strand, within Rv0471c at 562.361 kb on + strand, within Rv0471c at 562.361 kb on + strand, within Rv0471c at 562.362 kb on - strand, within Rv0471c at 562.362 kb on - strand, within Rv0471c at 562.362 kb on - strand, within Rv0471c at 562.362 kb on - strand, within Rv0471c at 562.362 kb on - strand, within Rv0471c at 562.403 kb on + strand, within Rv0471c at 562.404 kb on - strand, within Rv0471c at 562.418 kb on + strand, within Rv0471c at 562.418 kb on + strand, within Rv0471c at 562.451 kb on + strand, within Rv0471c at 562.452 kb on - strand, within Rv0471c at 562.464 kb on + strand, within Rv0471c at 562.464 kb on + strand, within Rv0471c at 562.464 kb on + strand, within Rv0471c at 562.464 kb on + strand, within Rv0471c at 562.464 kb on + strand, within Rv0471c at 562.465 kb on - strand, within Rv0471c at 562.465 kb on - strand, within Rv0471c at 562.465 kb on - strand, within Rv0471c at 562.670 kb on + strand at 562.671 kb on - strand at 562.724 kb on + strand at 562.724 kb on + strand at 562.724 kb on + strand at 562.841 kb on + strand, within Rv0472c at 562.923 kb on - strand, within Rv0472c at 563.050 kb on - strand, within Rv0472c at 563.102 kb on + strand, within Rv0472c at 563.102 kb on + strand, within Rv0472c at 563.103 kb on - strand, within Rv0472c at 563.244 kb on - strand, within Rv0472c at 563.278 kb on + strand, within Rv0472c at 563.415 kb on + strand at 563.464 kb on + strand at 563.464 kb on + strand at 563.534 kb on + strand at 563.535 kb on - strand at 563.535 kb on - strand at 563.535 kb on - strand at 563.575 kb on + strand at 563.575 kb on + strand at 563.575 kb on + strand at 563.575 kb on + strand at 563.575 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Rifampicin 0.014 ug/mL remove 561,272 + Rv0470c 0.49 +0.5 561,615 - Rv0470c 0.89 +1.6 561,798 + +0.1 561,798 + -0.4 561,799 - -0.6 561,952 + Rv0470A 0.22 -0.5 561,953 - Rv0470A 0.22 -0.4 561,953 - Rv0470A 0.22 -0.7 562,091 + Rv0470A 0.54 -0.5 562,099 + Rv0470A 0.56 -1.1 562,100 - Rv0470A 0.56 -0.5 562,100 - Rv0470A 0.56 -1.9 562,100 - Rv0470A 0.56 -0.1 562,103 + Rv0470A 0.56 +1.8 562,103 + Rv0470A 0.56 +1.8 562,103 + Rv0470A 0.56 -0.0 562,103 + Rv0470A 0.56 -0.5 562,104 - Rv0470A 0.57 +0.2 562,104 - Rv0470A 0.57 -0.2 562,104 - Rv0470A 0.57 -0.0 562,104 - Rv0470A 0.57 -1.4 562,107 + Rv0470A 0.57 -0.5 562,160 + Rv0470A 0.69 -1.2 562,197 + Rv0470A 0.78 -0.5 562,219 + Rv0470A 0.83 -1.6 562,219 + Rv0470A 0.83 -0.0 562,302 + Rv0471c 0.16 +0.1 562,303 - Rv0471c 0.16 +0.2 562,303 - Rv0471c 0.16 +0.2 562,303 - Rv0471c 0.16 +0.2 562,303 - Rv0471c 0.16 -0.7 562,305 + Rv0471c 0.16 +1.8 562,305 + Rv0471c 0.16 -0.1 562,305 + Rv0471c 0.16 +0.1 562,306 - Rv0471c 0.17 +1.0 562,306 - Rv0471c 0.17 -1.0 562,306 - Rv0471c 0.17 +0.0 562,306 - Rv0471c 0.17 -0.6 562,359 + Rv0471c 0.27 -0.1 562,359 + Rv0471c 0.27 -0.4 562,359 + Rv0471c 0.27 -0.4 562,360 - Rv0471c 0.28 +1.2 562,360 - Rv0471c 0.28 +0.4 562,360 - Rv0471c 0.28 -0.3 562,360 - Rv0471c 0.28 +2.4 562,360 - Rv0471c 0.28 -0.2 562,360 - Rv0471c 0.28 +0.2 562,361 + Rv0471c 0.28 -0.9 562,361 + Rv0471c 0.28 -1.6 562,361 + Rv0471c 0.28 -0.7 562,361 + Rv0471c 0.28 -0.1 562,362 - Rv0471c 0.28 -0.8 562,362 - Rv0471c 0.28 -0.6 562,362 - Rv0471c 0.28 +0.5 562,362 - Rv0471c 0.28 -0.2 562,362 - Rv0471c 0.28 +0.4 562,403 + Rv0471c 0.36 +2.1 562,404 - Rv0471c 0.37 +2.2 562,418 + Rv0471c 0.39 +0.9 562,418 + Rv0471c 0.39 +0.2 562,451 + Rv0471c 0.46 -0.2 562,452 - Rv0471c 0.46 +0.1 562,464 + Rv0471c 0.49 +0.4 562,464 + Rv0471c 0.49 +0.1 562,464 + Rv0471c 0.49 +0.2 562,464 + Rv0471c 0.49 -0.3 562,464 + Rv0471c 0.49 +0.6 562,465 - Rv0471c 0.49 -0.3 562,465 - Rv0471c 0.49 +0.2 562,465 - Rv0471c 0.49 -0.4 562,670 + -0.6 562,671 - -0.4 562,724 + +0.8 562,724 + +0.0 562,724 + -0.8 562,841 + Rv0472c 0.17 -1.0 562,923 - Rv0472c 0.28 -2.3 563,050 - Rv0472c 0.46 -0.5 563,102 + Rv0472c 0.54 -2.4 563,102 + Rv0472c 0.54 -2.9 563,103 - Rv0472c 0.54 -1.6 563,244 - Rv0472c 0.74 -1.5 563,278 + Rv0472c 0.79 -1.7 563,415 + -3.9 563,464 + -1.4 563,464 + -0.5 563,534 + -1.1 563,535 - +0.8 563,535 - -0.6 563,535 - +0.1 563,575 + -1.3 563,575 + -1.3 563,575 + +0.6 563,575 + -1.3 563,575 + -1.0
Or see this region's nucleotide sequence