Experiment: 7H9 with Rifampicin 0.014 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0344c and Rv0345 are separated by 108 nucleotides Rv0345 and Rv0346c are separated by 41 nucleotides Rv0346c and Rv0347 are separated by 338 nucleotides
Rv0344c: Rv0344c - Probable lipoprotein LpqJ, at 414,381 to 414,941
Rv0344c
Rv0345: Rv0345 - Conserved hypothetical protein, at 415,050 to 415,460
Rv0345
Rv0346c: Rv0346c - Possible L-asparagine permease AnsP2 (L-asparagine transport protein), at 415,502 to 416,965
Rv0346c
Rv0347: Rv0347 - Probable conserved membrane protein, at 417,304 to 418,290
Rv0347
Position (kb) 415
416
417 Strain fitness (log2 ratio) -1
0
1
2
3 at 414.692 kb on - strand, within Rv0344c at 414.792 kb on - strand, within Rv0344c at 414.800 kb on + strand, within Rv0344c at 414.886 kb on - strand at 414.946 kb on + strand at 414.946 kb on + strand at 414.967 kb on - strand at 414.975 kb on + strand at 414.981 kb on - strand at 415.001 kb on + strand at 415.002 kb on - strand at 415.034 kb on + strand at 415.035 kb on - strand at 415.105 kb on - strand, within Rv0345 at 415.184 kb on + strand, within Rv0345 at 415.185 kb on - strand, within Rv0345 at 415.185 kb on - strand, within Rv0345 at 415.426 kb on + strand at 415.426 kb on + strand at 415.427 kb on - strand at 415.594 kb on - strand at 415.668 kb on + strand, within Rv0346c at 415.669 kb on - strand, within Rv0346c at 415.932 kb on + strand, within Rv0346c at 416.020 kb on - strand, within Rv0346c at 416.020 kb on - strand, within Rv0346c at 416.020 kb on - strand, within Rv0346c at 416.139 kb on + strand, within Rv0346c at 416.147 kb on - strand, within Rv0346c at 416.148 kb on + strand, within Rv0346c at 416.148 kb on + strand, within Rv0346c at 416.149 kb on - strand, within Rv0346c at 416.187 kb on + strand, within Rv0346c at 416.187 kb on + strand, within Rv0346c at 416.300 kb on + strand, within Rv0346c at 416.324 kb on + strand, within Rv0346c at 416.596 kb on - strand, within Rv0346c at 416.649 kb on + strand, within Rv0346c at 416.649 kb on + strand, within Rv0346c at 416.650 kb on - strand, within Rv0346c at 416.650 kb on - strand, within Rv0346c at 416.650 kb on - strand, within Rv0346c at 416.650 kb on - strand, within Rv0346c at 416.650 kb on - strand, within Rv0346c at 416.650 kb on - strand, within Rv0346c at 416.685 kb on + strand, within Rv0346c at 416.700 kb on + strand, within Rv0346c at 416.790 kb on + strand, within Rv0346c at 416.791 kb on - strand, within Rv0346c at 416.854 kb on + strand at 416.954 kb on + strand at 416.955 kb on - strand at 416.955 kb on - strand at 417.039 kb on - strand at 417.148 kb on + strand at 417.149 kb on - strand at 417.227 kb on - strand at 417.238 kb on + strand at 417.238 kb on + strand at 417.350 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Rifampicin 0.014 ug/mL remove 414,692 - Rv0344c 0.55 -0.2 414,792 - Rv0344c 0.73 -0.8 414,800 + Rv0344c 0.75 +0.1 414,886 - -0.5 414,946 + -0.6 414,946 + -0.6 414,967 - +0.8 414,975 + +0.2 414,981 - -0.6 415,001 + -0.6 415,002 - -1.6 415,034 + -0.4 415,035 - -1.2 415,105 - Rv0345 0.13 +0.0 415,184 + Rv0345 0.33 -0.2 415,185 - Rv0345 0.33 -0.3 415,185 - Rv0345 0.33 -0.4 415,426 + +0.9 415,426 + +0.1 415,427 - -0.3 415,594 - +0.2 415,668 + Rv0346c 0.11 +1.5 415,669 - Rv0346c 0.11 +1.3 415,932 + Rv0346c 0.29 +1.2 416,020 - Rv0346c 0.35 +0.6 416,020 - Rv0346c 0.35 +0.6 416,020 - Rv0346c 0.35 +0.2 416,139 + Rv0346c 0.44 -0.1 416,147 - Rv0346c 0.44 +1.5 416,148 + Rv0346c 0.44 +0.2 416,148 + Rv0346c 0.44 +1.1 416,149 - Rv0346c 0.44 +1.8 416,187 + Rv0346c 0.47 +0.8 416,187 + Rv0346c 0.47 +0.4 416,300 + Rv0346c 0.55 +1.5 416,324 + Rv0346c 0.56 -0.2 416,596 - Rv0346c 0.75 +1.0 416,649 + Rv0346c 0.78 +0.9 416,649 + Rv0346c 0.78 +1.1 416,650 - Rv0346c 0.78 +1.2 416,650 - Rv0346c 0.78 +0.7 416,650 - Rv0346c 0.78 +0.2 416,650 - Rv0346c 0.78 +0.6 416,650 - Rv0346c 0.78 +0.7 416,650 - Rv0346c 0.78 +1.1 416,685 + Rv0346c 0.81 +1.2 416,700 + Rv0346c 0.82 +0.4 416,790 + Rv0346c 0.88 +0.7 416,791 - Rv0346c 0.88 +0.5 416,854 + +1.0 416,954 + +2.8 416,955 - +1.2 416,955 - +0.3 417,039 - -0.9 417,148 + +0.6 417,149 - -0.7 417,227 - -0.0 417,238 + -0.3 417,238 + -0.5 417,350 + +0.2
Or see this region's nucleotide sequence