Experiment: 7H9 with Rifampicin 0.014 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0233 and Rv0234c are separated by 75 nucleotides Rv0234c and Rv0235c are separated by 25 nucleotides
Rv0233: Rv0233 - Ribonucleoside-diphosphate reductase (beta chain) NrdB (ribonucleotide reductase small chain), at 278,585 to 279,529
Rv0233
Rv0234c: Rv0234c - Succinate-semialdehyde dehydrogenase [NADP+] dependent (SSDH) GabD1, at 279,605 to 281,140
Rv0234c
Rv0235c: Rv0235c - Probable conserved transmembrane protein, at 281,166 to 282,614
Rv0235c
Position (kb) 279
280
281
282 Strain fitness (log2 ratio) -2
-1
0
1 at 278.750 kb on + strand, within Rv0233 at 278.750 kb on + strand, within Rv0233 at 278.861 kb on + strand, within Rv0233 at 278.861 kb on + strand, within Rv0233 at 278.861 kb on + strand, within Rv0233 at 278.861 kb on + strand, within Rv0233 at 278.861 kb on + strand, within Rv0233 at 278.862 kb on - strand, within Rv0233 at 278.862 kb on - strand, within Rv0233 at 278.862 kb on - strand, within Rv0233 at 278.862 kb on - strand, within Rv0233 at 278.862 kb on - strand, within Rv0233 at 278.862 kb on - strand, within Rv0233 at 278.954 kb on + strand, within Rv0233 at 278.954 kb on + strand, within Rv0233 at 278.954 kb on + strand, within Rv0233 at 279.068 kb on + strand, within Rv0233 at 279.069 kb on - strand, within Rv0233 at 279.110 kb on + strand, within Rv0233 at 279.110 kb on + strand, within Rv0233 at 279.111 kb on - strand, within Rv0233 at 279.378 kb on - strand, within Rv0233 at 279.378 kb on - strand, within Rv0233 at 279.458 kb on + strand at 279.734 kb on - strand at 279.904 kb on - strand, within Rv0234c at 279.949 kb on - strand, within Rv0234c at 280.627 kb on - strand, within Rv0234c at 280.987 kb on - strand at 281.036 kb on - strand at 281.155 kb on - strand at 282.064 kb on + strand, within Rv0235c at 282.065 kb on - strand, within Rv0235c at 282.065 kb on - strand, within Rv0235c at 282.067 kb on + strand, within Rv0235c at 282.067 kb on + strand, within Rv0235c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Rifampicin 0.014 ug/mL remove 278,750 + Rv0233 0.17 -0.6 278,750 + Rv0233 0.17 +0.2 278,861 + Rv0233 0.29 +0.1 278,861 + Rv0233 0.29 -0.3 278,861 + Rv0233 0.29 -0.6 278,861 + Rv0233 0.29 +1.2 278,861 + Rv0233 0.29 -0.2 278,862 - Rv0233 0.29 -0.0 278,862 - Rv0233 0.29 -0.8 278,862 - Rv0233 0.29 +0.5 278,862 - Rv0233 0.29 -0.0 278,862 - Rv0233 0.29 +0.7 278,862 - Rv0233 0.29 -2.0 278,954 + Rv0233 0.39 -0.4 278,954 + Rv0233 0.39 -1.2 278,954 + Rv0233 0.39 +1.7 279,068 + Rv0233 0.51 +1.7 279,069 - Rv0233 0.51 +0.6 279,110 + Rv0233 0.56 -1.0 279,110 + Rv0233 0.56 +0.4 279,111 - Rv0233 0.56 -0.2 279,378 - Rv0233 0.84 -2.0 279,378 - Rv0233 0.84 -0.6 279,458 + -0.2 279,734 - -1.2 279,904 - Rv0234c 0.19 +0.5 279,949 - Rv0234c 0.22 +0.2 280,627 - Rv0234c 0.67 +0.9 280,987 - -0.1 281,036 - +1.7 281,155 - +0.2 282,064 + Rv0235c 0.62 +0.4 282,065 - Rv0235c 0.62 +1.1 282,065 - Rv0235c 0.62 -0.6 282,067 + Rv0235c 0.62 +1.4 282,067 + Rv0235c 0.62 +0.2
Or see this region's nucleotide sequence