Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3549c

Experiment: 7H9 with Rifampicin 0.00045 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Rifampicin 0.00045 ug/mL
3,987,380	-				+2.9
3,987,383	+				+0.9
3,987,392	+				+0.8
3,987,393	-				-0.3
3,987,539	-		Rv3548c	0.17	-0.4
3,987,580	+		Rv3548c	0.22	-0.6
3,987,581	-		Rv3548c	0.22	+0.2
3,987,776	+		Rv3548c	0.43	-0.4
3,987,777	-		Rv3548c	0.43	+0.1
3,987,802	+		Rv3548c	0.46	-1.6
3,987,803	-		Rv3548c	0.46	-1.0
3,987,803	-		Rv3548c	0.46	-0.4
3,987,803	-		Rv3548c	0.46	-0.7
3,987,803	-		Rv3548c	0.46	-0.0
3,988,026	-		Rv3548c	0.70	-0.0
3,988,026	-		Rv3548c	0.70	-0.6
3,988,348	-				-1.0
3,988,636	-		Rv3549c	0.41	-0.1
3,988,815	+		Rv3549c	0.64	+0.2
3,988,932	+		Rv3549c	0.79	+0.7
3,989,423	+		Rv3550	0.36	+0.2
3,989,424	-		Rv3550	0.36	+0.1
3,989,811	-		Rv3550	0.88	+0.1
3,989,831	-				+0.2
3,989,894	+				-0.5
3,989,894	+				-0.3
3,989,894	+				-0.6
3,989,894	+				-0.3
3,989,895	-				-1.8
3,990,049	+		Rv3551	0.17	-0.7