Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3495c

Experiment: 7H9 with Rifampicin 0.00045 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Rifampicin 0.00045 ug/mL
3,912,452	+		Rv3494c	0.46	+0.6
3,912,528	+		Rv3494c	0.50	-0.1
3,912,789	+		Rv3494c	0.66	-0.7
3,912,790	-		Rv3494c	0.66	-0.4
3,913,037	+		Rv3494c	0.80	+0.4
3,913,038	-		Rv3494c	0.80	+1.7
3,913,038	-		Rv3494c	0.80	-1.4
3,913,048	-		Rv3494c	0.81	-0.6
3,913,076	+		Rv3494c	0.83	+0.3
3,913,076	+		Rv3494c	0.83	+1.9
3,913,212	+				-0.2
3,913,213	-				-0.8
3,913,251	+				-1.4
3,913,288	-				+0.3
3,913,413	-				+1.9
3,913,513	+		Rv3495c	0.12	-1.2
3,913,514	-		Rv3495c	0.12	-0.2
3,913,577	+		Rv3495c	0.17	-0.6
3,913,577	+		Rv3495c	0.17	-1.7
3,913,578	-		Rv3495c	0.17	-0.5
3,913,578	-		Rv3495c	0.17	-0.5
3,913,578	-		Rv3495c	0.17	-0.8
3,913,583	-		Rv3495c	0.18	-0.4
3,913,583	-		Rv3495c	0.18	-2.5
3,913,696	+		Rv3495c	0.27	-0.6
3,914,051	+		Rv3495c	0.58	-1.0
3,914,188	-		Rv3495c	0.70	-0.8
3,914,193	+		Rv3495c	0.70	-0.9
3,914,193	+		Rv3495c	0.70	-1.0
3,914,193	+		Rv3495c	0.70	-0.1
3,914,194	-		Rv3495c	0.70	-0.9
3,914,194	-		Rv3495c	0.70	-0.6
3,914,612	+				+0.6
3,914,612	+				-0.3
3,914,613	-				+1.6
3,914,613	-				-1.5
3,914,613	-				-0.2
3,914,721	+		Rv3496c	0.14	-0.7
3,914,722	-		Rv3496c	0.14	-1.2
3,914,722	-		Rv3496c	0.14	+1.9
3,914,782	-		Rv3496c	0.19	-0.8
3,914,964	+		Rv3496c	0.32	-1.0
3,914,964	+		Rv3496c	0.32	-1.0
3,914,964	+		Rv3496c	0.32	-0.3
3,914,964	+		Rv3496c	0.32	-0.9
3,914,965	-		Rv3496c	0.32	-0.4
3,914,965	-		Rv3496c	0.32	-1.8
3,914,966	+		Rv3496c	0.32	-0.5
3,914,973	+		Rv3496c	0.33	-0.8
3,914,973	+		Rv3496c	0.33	-0.7
3,914,973	+		Rv3496c	0.33	-0.5
3,915,255	-		Rv3496c	0.53	-0.3
3,915,527	+		Rv3496c	0.73	-0.7