Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3198c

Experiment: 7H9 with Rifampicin 0.00045 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Rifampicin 0.00045 ug/mL
3,568,140	+		Rv3197	0.83	-0.6
3,568,140	+		Rv3197	0.83	-0.3
3,568,141	-		Rv3197	0.83	+0.9
3,568,279	+				-0.1
3,568,280	-				-0.4
3,568,402	+				+0.6
3,568,403	-				+0.5
3,568,403	-				-0.1
3,568,471	-		Rv3197A	0.25	+3.2
3,568,672	-				-0.1
3,568,825	+				-0.7
3,568,825	+				-0.7
3,568,825	+				-0.3
3,568,825	+				+0.2
3,568,826	-				+0.0
3,568,826	-				-0.3
3,568,826	-				-0.0
3,568,830	-				-0.2
3,568,830	-				+0.1
3,568,836	+				+0.0
3,568,837	-				-0.2
3,568,837	-				+0.5
3,568,840	+				+0.3
3,568,891	+				+1.9
3,568,891	+				+0.9
3,569,098	-				-1.4
3,569,212	-				-0.7
3,569,257	+				-1.5
3,569,257	+				+0.5
3,569,258	-				-0.5
3,569,258	-				+1.9
3,569,394	-		Rv3198c	0.14	+0.8
3,571,233	-				-0.9
3,571,322	-				+0.9
3,571,359	+				+0.0
3,571,359	+				+1.9
3,571,359	+				-0.2
3,571,360	-				-0.0
3,571,360	-				+0.2
3,571,360	-				-0.2
3,571,360	-				+0.5
3,571,360	-				+0.3
3,571,360	-				+1.0
3,571,360	-				-0.7
3,571,360	-				-0.2
3,571,361	+		Rv3198A	0.10	-0.2
3,571,362	-		Rv3198A	0.11	-1.0
3,571,380	+		Rv3198A	0.18	-0.7
3,571,381	-		Rv3198A	0.18	-0.1
3,571,426	-		Rv3198A	0.36	+2.7
3,571,588	-				+0.1
3,571,850	-		Rv3199c	0.26	-2.1
3,572,115	+		Rv3199c	0.54	+0.1